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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 28-AUG-2013
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TCH8431/19A
- locus tag: HMPREF0837_10916 [new locus tag: HMPREF0837_RS04415 ]
- pan locus tag?: PNEUPAN001519000
- symbol: brnQ
- pan gene symbol?: brnQ
- synonym:
- product: branched-chain amino acid transport system II carrier protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: HMPREF0837_10916 [new locus tag: HMPREF0837_RS04415 ]
- symbol: brnQ
- product: branched-chain amino acid transport system II carrier protein
- replicon: chromosome
- strand: +
- coordinates: 838646..839986
- length: 1341
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP001993 (838646..839986) NCBI
- BioCyc: see HMPREF0837_RS04415
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0546 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1321ATGAAGGAGATTTTTATGGCTAAAAAAGGTACCCTAACAGGTTTGCTCCTGTTTGGAATA
TTTTTTGGTGCGGGGAACTTGATTTTTCCGCCTTCTCTAGGTGCTCTATCTGGAGAACAT
TTTCTTCCTGCCATCGCAGGTTTTGTCTTTTCAGGCGTTGGTATCGCCGTCTTGACCCTT
ATTATTGGAACGCTAAATCCTAAAGGATATATCTACGAGATTTCAACGAAGATAGCGCCT
TGGTTTGCGACTCTTTACCTCTCAGTTCTTTACTTGTCAATCGGTCCATTCTTTGCTACC
CCACGTACTGCTACAACAGCTTACGAAGTAGGGATTAGCCCCCTTTTGTCGGATGCAAAT
AAAGGACTTGGCTTGATTGTATTTACGGTTCTGTATTTTGCGGCAGCCTATTTGATTTCG
CTTAATCCATCAAAAATCTTAGACCGCATTGGACGTGTTTTAACGCCAGTCTTTGCAATT
TTGATTGTTATCTTGGTCGTTCTGGGAGCTATCAAATATGGTGGAACAAGTCCTCAAGCT
GCTTCAGCTGCTTATCAAGCTTCTGCCTTTGGTACAGGTTTCCTAGAAGGTTACAATACC
TTGGACGCCCTTGCTTCAGTGGCCTTTAGCGTAATCGCAGTTCAAACCTTGAAACAACTT
GGATTTTCAAGTAAGAAAGAATACATTTCAACTATTTGGGTTGTTGGTATCGTTGTTGCC
CTTGCCTTCAGCGCTCTTTACATCGGTTTAGGTTTTCTTGGAAATCATTTCCCAGTACCA
GCTGAAGCGATGAAGGGTGGAACACCAGGTGTTTACATCTTGTCACAAGCCACTCAAGAA
ATCTTTGGCTCAACAGCTCAACTCTTCCTTGCAGCTATGGTTACCGTAACCTGCTTCACA
ACGACTGTTGGTTTGATTGTGTCAACAGCTGAGTTCTTTAATGAGCGCTTCCCACAAATC
AGCTACAAGGTTTATGCGACAGCCTTTACCTTGATTGGATTTGCTATTGCCAATTTGGGT
CTTGATGCGATTATCAAGTACTCAATTCCAGTACTGGTTATCTTGTACCCAATCACGATT
GCTATCGTTATGATTGTCATTGTCAACAAATTTGTTGCCCTTTCAAAACCAGGTATGCAG
TTGACAATTGCTGTGGTTACAGTTATTGCCATTGCAAGCGTACTAGGAAGCTCGTTTAAG
GTTGAGTTTCTTGCAAATCTTGTTAGCGTTCTTCCTTTTGCCAAGGCATCTCTCCCATGG
TTGGTGCCAGCCATTGTTGGAATCTTGCTCTCATTGGTTCTACCAAACAAGCAAGAAAGC
GATGTTTTTGAAATGGAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: HMPREF0837_10916 [new locus tag: HMPREF0837_RS04415 ]
- symbol: BrnQ
- description: branched-chain amino acid transport system II carrier protein
- length: 446
- theoretical pI: 9.20048
- theoretical MW: 47284.9
- GRAVY: 0.98991
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Amino acids, peptides and amines branched-chain amino acid transport system II carrier protein (TIGR00796; HMM-score: 360.1)
- TheSEED :
- Branched-chain amino acid transport system carrier protein
- PFAM: APC (CL0062) Branch_AA_trans; Branched-chain amino acid transport protein (PF05525; HMM-score: 492.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 12
- DeepLocPro: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 0.9992
- Cell wall & surface Score: 0
- Extracellular Score: 0.0008
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.220912
- TAT(Tat/SPI): 0.011187
- LIPO(Sec/SPII): 0.126929
- predicted transmembrane helices (TMHMM): 12
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: ADI69144 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKEIFMAKKGTLTGLLLFGIFFGAGNLIFPPSLGALSGEHFLPAIAGFVFSGVGIAVLTLIIGTLNPKGYIYEISTKIAPWFATLYLSVLYLSIGPFFATPRTATTAYEVGISPLLSDANKGLGLIVFTVLYFAAAYLISLNPSKILDRIGRVLTPVFAILIVILVVLGAIKYGGTSPQAASAAYQASAFGTGFLEGYNTLDALASVAFSVIAVQTLKQLGFSSKKEYISTIWVVGIVVALAFSALYIGLGFLGNHFPVPAEAMKGGTPGVYILSQATQEIFGSTAQLFLAAMVTVTCFTTTVGLIVSTAEFFNERFPQISYKVYATAFTLIGFAIANLGLDAIIKYSIPVLVILYPITIAIVMIVIVNKFVALSKPGMQLTIAVVTVIAIASVLGSSFKVEFLANLVSVLPFAKASLPWLVPAIVGILLSLVLPNKQESDVFEME
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0546 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]