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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 28-AUG-2013
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TCH8431/19A
- locus tag: HMPREF0837_11233 [new locus tag: HMPREF0837_RS05915 ]
- pan locus tag?: PNEUPAN002554000
- symbol: HMPREF0837_11233
- pan gene symbol?: licB
- synonym:
- product: putative membrane protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: HMPREF0837_11233 [new locus tag: HMPREF0837_RS05915 ]
- symbol: HMPREF0837_11233
- product: putative membrane protein
- replicon: chromosome
- strand: +
- coordinates: 1131348..1132238
- length: 891
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP001993 (1131348..1132238) NCBI
- BioCyc: see HMPREF0837_RS05915
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1124 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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841ATGGAGGTTCAGATGAAAAGTAAAAACGGAGTTCCTTTTGGCCTTCTCTCAGGTATTTTC
TGGGGCTTGGGTCTAACGGTTAGTGCTTATATCTTTTCGATTTTTACAGATTTGTCACCC
TTTGTGGTGGCTGCAACTCATGATTTTTTGAGCATCTTTATCTTACTAGCTTTTCTCTTG
GTAAAAGAAGGGAAAGTTCGCCTCTCAATTTTCTTAAATATTCGCAATGTCAGTGTTATC
ATAGGAGCCTTGCTAGCAGGCCCTATCGGTATGCAGGCCAATCTTTATGCAGTTAAGTAT
ATCGGAAGTTCTTTAGCTTCATCTGTATCGGCTATTTACCCTGCGATTTCAGTTCTATTG
GCTTTCTTCTTTTTGAAGCACAAGATTTCGAAAAATACTGTATTTGGGATTGTCTTGATT
ATTGGAGGGATTATTGCCCAGACCTATAAGGTTGAACAGGTTAATTCTTTCTACATTGGG
ATTCTTTGTGCTTTGGTTTGTGCTATTGCATGGGGAAGTGAGAGTGTTCTTAGCTCTTTT
GCCATGGAAAGTGAATTGAGTGAAATCGAAGCCCTCTTAATCCGTCAAGTAACTTCGTTC
TTGTCCTATCTTGTGATTGTGCTCTTCTCTCATCAGTCATTTGTTGCAGTAGCCAATGGA
CAATTGCTAGGTCTCATGATTGTCTTTGTAGCCTTTGATATGATTTCCTATTTGGCTTAT
TATATCGCTATCAATCGCTTGCAACCAGCCAAGGCTACAGGCTTGAACGTGAGCTATGTA
GTATGGACTGTCTTGTTCGCAGCTCTTTTCTTGGGAACATCATTAGATATGCTGACCATT
ATGACGTCACTTGTCGTCATTGCTGGAGTTTATATTATTATTAAAGAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: HMPREF0837_11233 [new locus tag: HMPREF0837_RS05915 ]
- symbol: HMPREF0837_11233
- description: putative membrane protein
- length: 296
- theoretical pI: 8.58976
- theoretical MW: 32149.2
- GRAVY: 1.12804
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Amino acids, peptides and amines carboxylate/amino acid/amine transporter (TIGR00950; HMM-score: 34.6)and 1 moreHypothetical proteins Conserved Tpt phosphate/phosphoenolpyruvate translocator (TIGR00817; HMM-score: 21.4)
- TheSEED :
- Choline permease LicB
- PFAM: DMT (CL0184) EamA; EamA-like transporter family (PF00892; HMM-score: 91.5)and 1 moreTPT; Triose-phosphate Transporter family (PF03151; HMM-score: 30.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 10
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.014758
- TAT(Tat/SPI): 0.001819
- LIPO(Sec/SPII): 0.009135
- predicted transmembrane helices (TMHMM): 10
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MEVQMKSKNGVPFGLLSGIFWGLGLTVSAYIFSIFTDLSPFVVAATHDFLSIFILLAFLLVKEGKVRLSIFLNIRNVSVIIGALLAGPIGMQANLYAVKYIGSSLASSVSAIYPAISVLLAFFFLKHKISKNTVFGIVLIIGGIIAQTYKVEQVNSFYIGILCALVCAIAWGSESVLSSFAMESELSEIEALLIRQVTSFLSYLVIVLFSHQSFVAVANGQLLGLMIVFVAFDMISYLAYYIAINRLQPAKATGLNVSYVVWTVLFAALFLGTSLDMLTIMTSLVVIAGVYIIIKE
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1124 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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