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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 28-AUG-2013
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TCH8431/19A
- locus tag: HMPREF0837_11808 [new locus tag: HMPREF0837_RS08665 ]
- pan locus tag?: PNEUPAN002975000
- symbol: HMPREF0837_11808
- pan gene symbol?: dpr
- synonym:
- product: ferritin-like protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: HMPREF0837_11808 [new locus tag: HMPREF0837_RS08665 ]
- symbol: HMPREF0837_11808
- product: ferritin-like protein
- replicon: chromosome
- strand: -
- coordinates: 1663518..1664054
- length: 537
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: CP001993 (1663518..1664054) NCBI
- BioCyc: see HMPREF0837_RS08665
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1402 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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121
181
241
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361
421
481ATGAATGAGGTAAAGAAAATGGTAGAATTGAAAAAAGAAGCAGTAAAAGACGTAACATCA
TTGACAAAAGCAGCGCCAGTAGCATTGGCAAAAACAAAGGAAGTCTTGAACCAAGCTGTT
GCTGATTTGTATGTAGCTCACGTTGCTTTGCACCAAGTGCACTGGTATATGCATGGTCGT
GGTTTCCTTGTATGGCATCCAAAAATGGATGAGTACATGGAAGCTCTTGACGGTCAATTG
GATGAAATCAGCGAACGCTTGATTACACTCGGTGGAAGCCCATTCTCTACATTGACAGAG
TTCCTTCAAAATAGTGAAATCGAAGAAGAAGCTGGTGAATATCGTAATGTTGAAGAAAGC
TTGGAACGTGTTCTAGCTATTTATCGCTACCTCATCACTCTTTTCCAAAAAGCGTTGGAT
GTGACTGACGAAGAAGGCGATGATGTTACAAACGATATTTTTGTTGGTGCTAAGGCTGAA
CTTGAGAAAACAGTTTGGATGCTTGCCGCAGAACTTGGACAAGCACCTGGTTTGTAA60
120
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240
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480
537
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: HMPREF0837_11808 [new locus tag: HMPREF0837_RS08665 ]
- symbol: HMPREF0837_11808
- description: ferritin-like protein
- length: 178
- theoretical pI: 4.39019
- theoretical MW: 20039.7
- GRAVY: -0.161236
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- Ferroxidase (EC 1.16.3.1)
- Iron-binding ferritin-like antioxidant protein
- Non-specific DNA-binding protein Dps
and 2 more - PFAM: Ferritin (CL0044) Ferritin; Ferritin-like domain (PF00210; HMM-score: 102.5)and 1 moreActin_ATPase (CL0108) BcrAD_BadFG; BadF/BadG/BcrA/BcrD ATPase family (PF01869; HMM-score: 13.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.8799
- Cytoplasmic Membrane Score: 0.0022
- Cell wall & surface Score: 0.0006
- Extracellular Score: 0.1173
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.008544
- TAT(Tat/SPI): 0.000898
- LIPO(Sec/SPII): 0.000925
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: ADI70036 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MNEVKKMVELKKEAVKDVTSLTKAAPVALAKTKEVLNQAVADLYVAHVALHQVHWYMHGRGFLVWHPKMDEYMEALDGQLDEISERLITLGGSPFSTLTEFLQNSEIEEEAGEYRNVEESLERVLAIYRYLITLFQKALDVTDEEGDDVTNDIFVGAKAELEKTVWMLAAELGQAPGL
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1402 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]