Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 28-AUG-2013
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TCH8431/19A
- locus tag: HMPREF0837_11860 [new locus tag: HMPREF0837_RS08895 ]
- pan locus tag?: PNEUPAN003006000
- symbol: HMPREF0837_11860
- pan gene symbol?: manR
- synonym:
- product: HTH domain protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: HMPREF0837_11860 [new locus tag: HMPREF0837_RS08895 ]
- symbol: HMPREF0837_11860
- product: HTH domain protein
- replicon: chromosome
- strand: -
- coordinates: 1703015..1704457
- length: 1443
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP001993 (1703015..1704457) NCBI
- BioCyc: see HMPREF0837_RS08895
- MicrobesOnline:
- PneumoBrowse for strain D39V:
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441ATGGAAACGTTGTTGCTCCTTTTGCGAGATAGTAAGGATTATATATCTGCTAAAGTATTG
GGAGAAAAATTAAATTGCTCTGATAAAACGGTTTATCGCCTTGTCAAGGTAATCAACAAA
GATTGTCCGGTAGAAGCATTCATTTTATCTGAAAAAGGCAGAGGCTTCAAATTAAATCCA
AGAAGTTCCCTCGTGGACGTTGATGGGAATTTTACAGAGGCTTTTGATCCTGAAGTAAGG
CGTGAAAAATTACTAGAACGTCTCTTGTTGACTGCTCCTAAGCCACATTCTATTTATGAT
TTAGGAGAGGAATTCTACGTAAGCGAGTCAGTAGTACTAAAAGATCGTCAGATATTACAA
GAGAGTCTAGCAATTTATGGGTTAGATTTAAAAATGAGACAACGAAAGCTTTTTATTGAT
GGGGATGAGGCTCAAATTCGTTCAGCCATTCTAAATCTACTGCCAATGTTTAATCAGTTG
GATTTAGAGCAAATTACACAGAATAAGGTTCAGCCTCTTGACGGAGAACTTGCTCACTTT
TGTTTGGGATTACTGATTACACTTGAGAGAGAATTGGGGGTAAACATTCCCTATCCATAT
AATATAAATATTTTCTCTCACCTGTATATTTTTATCAGTAGGAATCGTCGTAGTACTAGT
ATTCATGTTGTAGCACCTTCAAAACCTACTATTGTTGATGAGAAAATTTACAGTGTCTGT
CAAAAAATTATTCAAGAAATTGAACAATATTTTAAGATGAAGGTTGATGCAGTTGAGATT
GACTATCTTTATCAATACGTTGTATCTTCGAGATTGCAAAAACCATTTTCTTCCGGGAAG
CTTCCTTTTTCTCAGCGAGTTTTAGATGTCACTCATTACTATTTTAGCCGTATGTGTATG
GACAATAGAGAGATTGAAACGACAGATCCTGACTTTGTTGACTTGGCGAGTCATATCAGT
CCCTTACTGAGGAGATTAGATAATAGAGTACAGATTAAGAATAGTCTTTTATCACAAATT
CTTTTAACCTATCCTAATCTGGTTAAAGAGTTAACAACTATTTCTAAAGAAGTGAGTCTA
GTATTTGGTTTTGCGTCCTTGAGTCTGGACGAGATTGGTTTTCTAGTCTTATATTTTGCA
CGGTTTCAAGAAAAGCGAGCACGTCCTCTAAAAACAGTAGTGATGTGTACATCAGGTGTC
GGAACTTCAGAGCTTTTACGAGCACGATTAGAAAAGCAATTTACTGAATTGGATATTATT
GATGTAGTTGCTTATCATCAATTAGATGAGCTGATAAATCTATATCCAGATTTAGATTTC
ATTGTGACGACGGTAGCTTTGCAGGAACCAGCAAGTGTCCCGTTTGTCCTAGTTAGTGTT
TTTCTAACCGAGGGTGATAAACAACGTCTTCAAGCAAAAATTCAGGAGATAAACTATGAA
TAA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
1020
1080
1140
1200
1260
1320
1380
1440
1443
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: HMPREF0837_11860 [new locus tag: HMPREF0837_RS08895 ]
- symbol: HMPREF0837_11860
- description: HTH domain protein
- length: 480
- theoretical pI: 5.5774
- theoretical MW: 55256.6
- GRAVY: -0.046875
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED :
- Transcriptional antiterminator of lichenan operon, BglG family
- PFAM: PRD (CL0166) PRD; PRD domain (PF00874; HMM-score: 62.4)HTH (CL0123) HTH_11; HTH domain (PF08279; HMM-score: 58.4)and 2 moreMga; Mga helix-turn-helix domain (PF05043; HMM-score: 37.6)Phosphatase (CL0031) PTS_IIB; PTS system, Lactose/Cellobiose specific IIB subunit (PF02302; HMM-score: 21.2)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.014442
- TAT(Tat/SPI): 0.000444
- LIPO(Sec/SPII): 0.004625
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- METLLLLLRDSKDYISAKVLGEKLNCSDKTVYRLVKVINKDCPVEAFILSEKGRGFKLNPRSSLVDVDGNFTEAFDPEVRREKLLERLLLTAPKPHSIYDLGEEFYVSESVVLKDRQILQESLAIYGLDLKMRQRKLFIDGDEAQIRSAILNLLPMFNQLDLEQITQNKVQPLDGELAHFCLGLLITLERELGVNIPYPYNINIFSHLYIFISRNRRSTSIHVVAPSKPTIVDEKIYSVCQKIIQEIEQYFKMKVDAVEIDYLYQYVVSSRLQKPFSSGKLPFSQRVLDVTHYYFSRMCMDNREIETTDPDFVDLASHISPLLRRLDNRVQIKNSLLSQILLTYPNLVKELTTISKEVSLVFGFASLSLDEIGFLVLYFARFQEKRARPLKTVVMCTSGVGTSELLRARLEKQFTELDIIDVVAYHQLDELINLYPDLDFIVTTVALQEPASVPFVLVSVFLTEGDKQRLQAKIQEINYE
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V:
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.