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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 19-SEP-2021
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae TCH8431/19A
- locus tag: HMPREF0837_RS07975 [old locus tag: HMPREF0837_11665 ]
- pan locus tag?: PNEUPAN001796000
- symbol: rpiA
- pan gene symbol?: rpiA
- synonym:
- product: ribose-5-phosphate isomerase RpiA
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: HMPREF0837_RS07975 [old locus tag: HMPREF0837_11665 ]
- symbol: rpiA
- product: ribose-5-phosphate isomerase RpiA
- replicon: chromosome
- strand: -
- coordinates: 1532603..1533286
- length: 684
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_014251 (1532603..1533286) NCBI
- BioCyc: HMPREF0837_RS07975 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0723 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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661GTGGAAAATCTGAAGAAAATGGCAGGTATCAAGGCTGCTGAGTTCGTGAGCGATGGAATG
GTCGTTGGACTTGGAACAGGCTCGACTGCCTATTATTTTGTCGAAGAAATCGGTCGTCGT
ATCAAGGAAGAAGGATTGCAGATTACAGCTGTAACAACTTCTAGTGTGACCACTAAACAG
GCAGAAGGCCTTAATATCCCGCTCAAGTCTATTGACCAAGTAGACTTTGTCGATGTGACG
GTTGATGGCGCGGATGAAGTGGATAGTCAGTTTAATGGAATCAAAGGCGGTGGTGGTGCC
CTTCTCATGGAAAAGGTGGTCGCAACACCATCAAAAGAATACATTTGGGTGGTGGATGAA
AGCAAGCTGGTCGAAAAACTAGGTGCTTTTAAATTGCCAGTAGAAGTGGTTCAGTATGGT
GCAGAGCAGGTCTTTCGTCATTTTGAACGAGCTGGCTACAAACCAAGTTTCCGTGAAAAA
GACGGCCAACGTTTTGTGACGGATATGCAGAATTTTATCATTGACCTCGCCTTGGATGTC
ATTGAAAATCCAATTGCTTTTGGACAAGAATTGGATCATGTCGTTGGTGTTGTGGAGCAT
GGTTTATTCAACCAAATGGTGGATAAGGTAATCGTTGCTGGACGGGATGGAGTTCAGATT
TCAACTTCAAAAAAAGGAAAATAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: HMPREF0837_RS07975 [old locus tag: HMPREF0837_11665 ]
- symbol: RpiA
- description: ribose-5-phosphate isomerase RpiA
- length: 227
- theoretical pI: 4.69062
- theoretical MW: 24792.1
- GRAVY: -0.0753304
⊟Function[edit | edit source]
- reaction: EC 5.3.1.6? ExPASyRibose-5-phosphate isomerase D-ribose 5-phosphate = D-ribulose 5-phosphate
- TIGRFAM: Energy metabolism Pentose phosphate pathway ribose 5-phosphate isomerase A (TIGR00021; EC 5.3.1.6; HMM-score: 275.9)
- TheSEED: see HMPREF0837_11665
- PFAM: ISOCOT_Fold (CL0246) Rib_5-P_isom_A; Ribose 5-phosphate isomerase A (phosphoriboisomerase A) (PF06026; HMM-score: 200.3)and 1 moreDeoRC; DeoR C terminal sensor domain (PF00455; HMM-score: 24.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.011513
- TAT(Tat/SPI): 0.005592
- LIPO(Sec/SPII): 0.001869
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000429299 NCBI
- UniProt: see HMPREF0837_11665
⊟Protein sequence[edit | edit source]
- MENLKKMAGIKAAEFVSDGMVVGLGTGSTAYYFVEEIGRRIKEEGLQITAVTTSSVTTKQAEGLNIPLKSIDQVDFVDVTVDGADEVDSQFNGIKGGGGALLMEKVVATPSKEYIWVVDESKLVEKLGAFKLPVEVVQYGAEQVFRHFERAGYKPSFREKDGQRFVTDMQNFIIDLALDVIENPIAFGQELDHVVGVVEHGLFNQMVDKVIVAGRDGVQISTSKKGK
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0723 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.