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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 02-AUG-2013
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae gamPNI0373
- locus tag: HMPREF1038_00131 [new locus tag: HMPREF1038_RS00640 ]
- pan locus tag?: PNEUPAN000695000
- symbol: HMPREF1038_00131
- pan gene symbol?: catE
- synonym:
- product: glyoxalase family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: HMPREF1038_00131 [new locus tag: HMPREF1038_RS00640 ]
- symbol: HMPREF1038_00131
- product: glyoxalase family protein
- replicon: chromosome
- strand: +
- coordinates: 107506..108360
- length: 855
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP001845 (107506..108360) NCBI
- BioCyc: see HMPREF1038_RS00640
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0072 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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841ATGACCTATGAATACAAGAGTCACATTTATTTGGCAGAGACAGTTTTAAATATAAAGGAT
TTGGCCAGTCAAACAGCCTTTTATCAGCAAGTTATTGGTTTAGAAATCTTATCTCAAACT
GAGACAGAGTCCATTCTAGGCCTTGGTGGAAAAGTCTTGGTACAGCTGATTCAAGCACAA
GAGAGCGGAGAAGTGAGGGAACATTATGGTCTTTACCATTTGGCCATTCTCTTGCCCACA
CGCAAGGCTTTGGCTGATGTCTTGAAACACCTGACAGATTTACAGATTCCTCTTGTCGGC
GGTGCAGACCATGGTTACAGTGAAGCTATTTACTTGGAAGATTTGGAGGGAAATGGCATT
GAACTCTATCGAGATAAGCCAGTTTCCACATGGGATATTCGAGAAGATGGACGCATTATC
GGAGTGACGGAGGCTCTTGCGGCGCAGGACATTTATGAGTTGGGGGAAAGAGTAGAGCCC
TTTATCCTGGCAGAAGGTACGAGAATGGGGCATATTCATCTTTCCGTCAAGGATAGTCGA
AAGTCCAGCCAGTTTTATCAAAAGGTGTTAGGGCTAGAGGATAAATTCAGTGTGCCTAGC
GCTAGTTGGATTGCGGCTGGAGATTACCATCATCATTTAGCAGTTAACGAATGGGGAGGA
AAAGGTCTGGCTTCGCGTAAGCAAGGCTTACCAGGTTTAGCCTACTATGTCATCGAAGTC
GCACACAAAAAAGAACTATTAACGATTGCCCAACGAGCACAAGAAGTTGACGCACCAATC
AAATGGATGACATCGAGCCAATTGGAAATCACAGACTCAGATGGCATCGTGACCCGTATT
CGTTTAGCAAGGTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: HMPREF1038_00131 [new locus tag: HMPREF1038_RS00640 ]
- symbol: HMPREF1038_00131
- description: glyoxalase family protein
- length: 284
- theoretical pI: 5.56039
- theoretical MW: 31665.8
- GRAVY: -0.163028
⊟Function[edit | edit source]
- TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase (TIGR02295; EC 1.13.11.15; HMM-score: 44.1)Energy metabolism Other lactoylglutathione lyase (TIGR00068; EC 4.4.1.5; HMM-score: 35.7)Central intermediary metabolism Amino sugars lactoylglutathione lyase (TIGR00068; EC 4.4.1.5; HMM-score: 35.7)and 4 moreEnergy metabolism Other catechol 2,3 dioxygenase (TIGR03211; EC 1.13.11.2; HMM-score: 28.5)Energy metabolism Other 2,3-dihydroxybiphenyl 1,2-dioxygenase (TIGR03213; EC 1.13.11.39; HMM-score: 25.2)lactoylglutathione lyase family protein (TIGR03645; HMM-score: 16.4)methylmalonyl-CoA epimerase (TIGR03081; EC 5.1.99.1; HMM-score: 15.1)
- TheSEED :
- Glyoxalase family protein
- PFAM: Glyoxalase (CL0104) Glyoxalase; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily (PF00903; HMM-score: 63)and 3 moreGlyoxalase_6; Glyoxalase-like domain (PF18029; HMM-score: 16.6)CppA_C; CppA C-terminal (PF14507; HMM-score: 13.2)no clan defined Imm32; Immunity protein 32 (PF15566; HMM-score: 12.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9985
- Cytoplasmic Membrane Score: 0.0004
- Cell wall & surface Score: 0.0003
- Extracellular Score: 0.0008
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.004246
- TAT(Tat/SPI): 0.000447
- LIPO(Sec/SPII): 0.00042
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: AFS42215 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MTYEYKSHIYLAETVLNIKDLASQTAFYQQVIGLEILSQTETESILGLGGKVLVQLIQAQESGEVREHYGLYHLAILLPTRKALADVLKHLTDLQIPLVGGADHGYSEAIYLEDLEGNGIELYRDKPVSTWDIREDGRIIGVTEALAAQDIYELGERVEPFILAEGTRMGHIHLSVKDSRKSSQFYQKVLGLEDKFSVPSASWIAAGDYHHHLAVNEWGGKGLASRKQGLPGLAYYVIEVAHKKELLTIAQRAQEVDAPIKWMTSSQLEITDSDGIVTRIRLAR
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0072 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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