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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 02-AUG-2013
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae gamPNI0373
- locus tag: HMPREF1038_00727 [new locus tag: HMPREF1038_RS03570 ]
- pan locus tag?: PNEUPAN001656000
- symbol: HMPREF1038_00727
- pan gene symbol?: glnP3b
- synonym:
- product: amino acid ABC transporter permease protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: HMPREF1038_00727 [new locus tag: HMPREF1038_RS03570 ]
- symbol: HMPREF1038_00727
- product: amino acid ABC transporter permease protein
- replicon: chromosome
- strand: -
- coordinates: 666450..666926
- length: 477
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP001845 (666450..666926) NCBI
- BioCyc: see HMPREF1038_RS03570
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0617 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421ATGCCCCAGCTGGTGCTACTCTTCATCGTTTACTTTGGCTTGGCTCGAAACTTTAATATC
AATATCTCAGGTGAGACTTCAGCTATTATCGTTTTTACCCTCTGGGGAACAGCTGAAATG
GGAGACTTGGTACGTGGAGCTATCACTTCTCTCCCTAAACATCAGTTTGAAAGTGGACAG
GCACTCGGCTTGACTAATGTTCAACTTTACTACCACATCATCATCCCACAAGTCTTAAGA
AGACTGCTACCGCAGGCTATCAATCTTGTCACTCGGATGATTAAAACCACTTCATTAGTT
GTTTTGATTGGGGTTGTGGAAGTGACCAAAGTTGGACAACAAATCATCGATAGCAATCGC
CTGACCATCCCAACTGCTTCATTTTGGATTTATGGAACCATTCTAATCTTATATTTCGCA
GTTTGCTACCCTATTTCCAAACTATCCACTCACTTAGAAAAACATTGGAGAAACTAA60
120
180
240
300
360
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477
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: HMPREF1038_00727 [new locus tag: HMPREF1038_RS03570 ]
- symbol: HMPREF1038_00727
- description: amino acid ABC transporter permease protein
- length: 158
- theoretical pI: 9.94018
- theoretical MW: 17799
- GRAVY: 0.538608
⊟Function[edit | edit source]
- TIGRFAM: ectoine/hydroxyectoine ABC transporter, permease protein EhuC (TIGR03004; HMM-score: 84.7)and 4 moreectoine/hydroxyectoine ABC transporter, permease protein EhuD (TIGR03003; HMM-score: 60.9)Transport and binding proteins Amino acids, peptides and amines amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family (TIGR01726; HMM-score: 25.9)Transport and binding proteins Anions phosphonate ABC transporter, permease protein PhnE (TIGR01097; HMM-score: 19.9)choline ABC transporter, permease protein (TIGR03416; HMM-score: 17.8)
- TheSEED :
- ABC-type amino acid transport system, permease component
- PFAM: BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 43.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.01
- Cytoplasmic Membrane Score: 9.99
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helix: 1
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.080435
- TAT(Tat/SPI): 0.003002
- LIPO(Sec/SPII): 0.021294
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: AFS42792 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MPQLVLLFIVYFGLARNFNINISGETSAIIVFTLWGTAEMGDLVRGAITSLPKHQFESGQALGLTNVQLYYHIIIPQVLRRLLPQAINLVTRMIKTTSLVVLIGVVEVTKVGQQIIDSNRLTIPTASFWIYGTILILYFAVCYPISKLSTHLEKHWRN
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0617 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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