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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 15-OCT-2021

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae gamPNI0373
  • locus tag: HMPREF1038_RS08360 [old locus tag: HMPREF1038_01704 ]
  • pan locus tag?: PNEUPAN003132000
  • symbol: HMPREF1038_RS08360
  • pan gene symbol?: scrB
  • synonym:
  • product: glycoside hydrolase family 32 protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: HMPREF1038_RS08360 [old locus tag: HMPREF1038_01704 ]
  • symbol: HMPREF1038_RS08360
  • product: glycoside hydrolase family 32 protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1572579..1574033
  • length: 1455
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NC_018630 (1572579..1574033) NCBI
  • BioCyc: HMPREF1038_RS08360 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1534 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    ATGGAATGGACAACTGAGCGTCGTTACAGACTTTATCAAGATTGGACGCAAGAAGAAATT
    CAACATATAAAGGAAAATATGGCACAATCTCCATGGCATACTCATTACCATGTTGAGCCA
    AAAACAGGACTTCTCAACGACCCAAATGGCTTTTCTTACTTTGATGGCAAGTGGATCCTC
    TTTTACCAGAATTTTCCTTTTGGTGCAGCCCACGGTTTGAAATCTTGGGCACAGCTAGAA
    AGTGATGATTTGGTTCACTTTAAAGAAACTGGAATCAAAGTTTTACCAGATACTCCATTA
    GATAGCCACGGTGCCTACTCTGGTTCTGCCATGCAATTTGGCGATAACTTATTCCTATTT
    TATACAGGAAATGTTCGCGATGAAAACTGGATCCGTCACCCATACCAGATCGGTGCTTTG
    ATGGACAAGGAGGGTAAGATTACAAAGATTGACAAGATCTTGATTGACCAGCCAGCAGAC
    TCTACTGACCACTTCCGCGATCCACAAATTTTTAACTTTAAAGGTCAATACTATGCTGTC
    GTCGGTGGACAGGACTTGGAGAAAAAAGGCTTCGTCCGTCTCTACAAGGCTGTCAATAAC
    GACTACACAAACTGGCAAGCAGTTGGCGACCTTGACTTTGCTAACGACCGTACTGCCTAC
    ATGATGGAATGTCCTAATCTGATCTTTGTAGAGGAACAGCCTGTCCTTCTCTACTGTCCA
    CAAGGATTGGATAAGAAAGTTCTAGACTACGATAATATCTTTCCAAATATGTATAAGATT
    GGGGCTTCCTTTGACCCTAAAAATGCCAAAATGGTAGATGTGTCTCAACTTCAAAACATG
    GATTACGGTTTCGAAGCCTATGCAACTCAAGCCTTCAACGCTCCTGATGGGCGTGCTCTA
    GCAGTTAGCTGGCTTGGTTTGCCAGATGTTTCTTACCCATCTGACTGTTTTGATCACCAA
    GGAACCTTCTCTTTGGTCAAGGAACTCACTATCAAAGACGACAAGCTCTACCAGTATCCA
    GTCGCTGCTATTAAGGACCTTCGTGCTTCTGAAGAAGCCTTCTCAAACCGTTCCCAAACC
    AAGAACACTTACGAACTTGAACTCAACTTGGAAGCTAATAGCCAGAGCGAGATTGTCTTA
    CTTGCTGATAAAGAAGGTAAGGGACTTTCAATCAACTTTGACCTTGTAAACGGTCAAGTG
    ACAGTGGATCGTAGCCAGGCTGGAGAACAGTATGCCCAAGAATTTGGGACAACTCGTTCT
    TGCCCTATCGAGAATCAGGCTACTACTGCTACAATCTTCATCGATAACTCTGTCTTTGAA
    ATTTTCATCAATAAAGGAGAAAAAGTATTTTCTGGTCGTGTCTTCCCACATGCGGACCAA
    AATGGTATCCTGATCAAATCTGGAAACCCAACTGGAACTTACTATGAATTAGATTATGGT
    CGCAAAACTAACTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1455

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: HMPREF1038_RS08360 [old locus tag: HMPREF1038_01704 ]
  • symbol: HMPREF1038_RS08360
  • description: glycoside hydrolase family 32 protein
  • length: 484
  • theoretical pI: 4.65818
  • theoretical MW: 55218.2
  • GRAVY: -0.535744

⊟Function[edit | edit source]

  • TIGRFAM:
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides sucrose-6-phosphate hydrolase (TIGR01322; EC 3.2.1.-; HMM-score: 531)
  • TheSEED: see HMPREF1038_01704
  • PFAM:
    B_Fructosidase (CL0143) Glyco_hydro_32N; Glycosyl hydrolases family 32 N-terminal domain (PF00251; HMM-score: 286.2)
    and 3 more
    Concanavalin (CL0004) Glyco_hydro_32C; Glycosyl hydrolases family 32 C terminal (PF08244; HMM-score: 64)
    B_Fructosidase (CL0143) Glyco_hydro_43; Glycosyl hydrolases family 43 (PF04616; HMM-score: 16.9)
    Zn_Beta_Ribbon (CL0167) zf_PR_Knuckle; PR zinc knuckle motif (PF18445; HMM-score: 14.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.67
    • Cytoplasmic Membrane Score: 0.01
    • Cellwall Score: 0.15
    • Extracellular Score: 0.17
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011006
    • TAT(Tat/SPI): 0.000607
    • LIPO(Sec/SPII): 0.001502
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000455297 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MEWTTERRYRLYQDWTQEEIQHIKENMAQSPWHTHYHVEPKTGLLNDPNGFSYFDGKWILFYQNFPFGAAHGLKSWAQLESDDLVHFKETGIKVLPDTPLDSHGAYSGSAMQFGDNLFLFYTGNVRDENWIRHPYQIGALMDKEGKITKIDKILIDQPADSTDHFRDPQIFNFKGQYYAVVGGQDLEKKGFVRLYKAVNNDYTNWQAVGDLDFANDRTAYMMECPNLIFVEEQPVLLYCPQGLDKKVLDYDNIFPNMYKIGASFDPKNAKMVDVSQLQNMDYGFEAYATQAFNAPDGRALAVSWLGLPDVSYPSDCFDHQGTFSLVKELTIKDDKLYQYPVAAIKDLRASEEAFSNRSQTKNTYELELNLEANSQSEIVLLADKEGKGLSINFDLVNGQVTVDRSQAGEQYAQEFGTTRSCPIENQATTATIFIDNSVFEIFINKGEKVFSGRVFPHADQNGILIKSGNPTGTYYELDYGRKTN

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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