PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

NCBI: 15-OCT-2021

⊟Summary

• organism: Streptococcus pneumoniae gamPNI0373
• locus tag: HMPREF1038_RS13330 [old locus tag: HMPREF1038_02128 ]
• pan locus tag^?: PNEUPAN002684000
• symbol: HMPREF1038_RS13330
• pan gene symbol^?: —
• synonym:
• product: hypothetical protein

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: HMPREF1038_RS13330 [old locus tag: HMPREF1038_02128 ]
• symbol: HMPREF1038_RS13330
• product: hypothetical protein
• replicon: chromosome
• strand: -
• coordinates: 1939530..1939901
• length: 372
• essential: unknown

⊟Accession numbers

• Location: NC_018630 (1939530..1939901) NCBI
• BioCyc:
• MicrobesOnline:
• PneumoBrowse for strain D39V:

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  
  ATGAAAATCAAAGAGCAAACTAGGAAGCTAACCGCAGGTTGCTCAAAACACTGTTTTGAG
  GTTGTGGATGAAACTGACGAAGTCAGCTCAAAACATGGTTTTGAGGTTGTAGATGAAACT
  GACGAAGTCAGCTCAAAACATGGTTTTGAGGTTGTAGATGAAACTGACGAAGTCAGCTCA
  AAACATGGTTTTGAGGTTGTAGATGAAACTGACGAAGTCAGCTCAAAACATGGTTTTGAG
  GTTGTAGATGAAACTGACGAAGTCAGCTCAAAACATGGTTTTGAGGTTGTAGATGAAACT
  GACGAAGTCAGTAACCATACCTACGGTAAGGCGACGCTGACGTGGTTTGAAGAGATTTTC
  GAAGAGTATTAG
  60
  120
  180
  240
  300
  360
  372
  

⊟Protein

⊟General

• locus tag: HMPREF1038_RS13330 [old locus tag: HMPREF1038_02128 ]
• symbol: HMPREF1038_RS13330
• description: hypothetical protein
• length: 123
• theoretical pI: 4.06825
• theoretical MW: 13971.9
• GRAVY: -0.763415

⊟Function

• TIGRFAM:
• TheSEED: see HMPREF1038_02128
• PFAM:
  no clan defined DUF3567; Protein of unknown function (DUF3567) (PF12091; HMM-score: 27)
  PPP-I (CL0570) S8_pro-domain; Peptidase S8 pro-domain (PF16470; HMM-score: 26.9)
  no clan defined Orthopox_F6; Orthopoxvirus F6 protein (PF06601; HMM-score: 22.2)
  and 2 more
  Phage_TACs (CL0567) Phage_TAC_8; Phage tail assembly chaperone protein Gp14 ()A118 (PF10666; HMM-score: 11.1)
  no clan defined DUF3638; Protein of unknown function (DUF3638) (PF12340; HMM-score: 9.8)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: unknown (no significant prediction)
  • Cytoplasmic Score: 2.5
  • Cytoplasmic Membrane Score: 2.5
  • Cellwall Score: 2.5
  • Extracellular Score: 2.5
  • Internal Helices: 0
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.007556
  • TAT(Tat/SPI): 0.001255
  • LIPO(Sec/SPII): 0.001302
• predicted transmembrane helices (TMHMM): 0

⊟Accession numbers

• GI:
• RefSeq: WP_001845647 NCBI
• UniProt:

⊟Protein sequence

• MKIKEQTRKLTAGCSKHCFEVVDETDEVSSKHGFEVVDETDEVSSKHGFEVVDETDEVSSKHGFEVVDETDEVSSKHGFEVVDETDEVSSKHGFEVVDETDEVSNHTYGKATLTWFEEIFEEY

⊟Experimental data

• protein localization:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• regulator:

⊟Expression data

• PneumoExpress for strain D39V:

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications