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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 04-FEB-2016
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae INV104
- locus tag: INV104_00740 [new locus tag: INV104_RS00460 ]
- pan locus tag?: PNEUPAN000757000
- symbol: INV104_00740
- pan gene symbol?: glpE_2
- synonym:
- product: conserved hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: INV104_00740 [new locus tag: INV104_RS00460 ]
- symbol: INV104_00740
- product: conserved hypothetical protein
- replicon: chromosome
- strand: +
- coordinates: 89857..90843
- length: 987
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: FQ312030 (89857..90843) NCBI
- BioCyc: see INV104_RS00460
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0091 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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961ATGGCAAAAGATATTCGTGTCTTACTTTACTACCTTTATACTCCAATTGAAAATGCAGAG
CAATTTGCTGCAGACCACTTGGCTTTCTGTAAATCAATCGGTCTTAAAGGCCGTATCCTA
GTCGCTGACGAGGGAATTAACGGAACAGTTTCAGGTGACTATGAAACAACTCAAAAATAC
ATGGACTACGTTCACAGCCTTCCAGGAATGGAAGAACTCTGGTTCAAGATTGACGAAGAA
AATGAACAAGCCTTCAAGAAGATGTTTGTTCGCTACAAGAAAGAAATTGTCCACCTTGGT
TTGGAAGACAACGACTTTGACAATGACATCAACCCACTTGAAACAACAGGTGCTTACTTG
TCTCCAAAAGAGTTCAAAGAAGCGCTTCTTGATAAAGATACCGTTGTCCTTGACACACGT
AACGATTATGAGTACGACCTAGGACATTTCCGTGGAGCTATTCGCCCAGATATTCGCAAC
TTCCGTGAGTTACCACAATGGGTCCGTGATAACAAGGAAAAATTCATGGACAAGCGTGTC
GTGGTTTACTGTACAGGTGGCGTTCGCTGTGAGAAATTCTCAGGCTGGATGGTCCGTGAA
GGCTACAAAGATGTCGGCCAATTGCACGGAGGAATCGCAACTTACGGTAAAGACCCAGAA
GTTCAAGGTGAGCTTTGGGATGGAAAAATGTACGTATTTGACGAGCGTATCGCCGTTGAT
GTCAACCATGTCAACCCAACCATCGTAGGGAAAGACTGGTTTGATGGAACACCATGTGAA
CGTTATGTCAACTGTGGAAATCCCTTCTGTAACCGTCGTATCTTGACATCAGAAGAAAAT
GAAGACAAGTACCTTCGTGGATGCTCACACGAGTGCCGTGTTCACCCACGTAACCGCTAT
GTTTCAAAAAATGAATTGACACAAGCTGAAGTGATCGAGCGCCTAGCCGCTATCGGTGAA
AGCTTGGATCAAGCAGCTACTGTATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: INV104_00740 [new locus tag: INV104_RS00460 ]
- symbol: INV104_00740
- description: conserved hypothetical protein
- length: 328
- theoretical pI: 4.86855
- theoretical MW: 37905.5
- GRAVY: -0.587805
⊟Function[edit | edit source]
- TIGRFAM: Protein synthesis tRNA and rRNA base modification tRNA 2-selenouridine synthase (TIGR03167; EC 2.9.1.-; HMM-score: 14.6)
- TheSEED :
- tRNA 5-hydroxyuridine(34) synthetase TrhO
- PFAM: Acylphosphatase (CL0622) UPF0176_N; UPF0176 acylphosphatase like domain (PF17773; HMM-score: 82.6)and 3 moreno clan defined Rhodanese_C; Rhodanase C-terminal (PF12368; HMM-score: 56.1)Phosphatase (CL0031) Rhodanese; Rhodanese-like domain (PF00581; HMM-score: 47.4)no clan defined VHP; Villin headpiece domain (PF02209; HMM-score: 12.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.012908
- TAT(Tat/SPI): 0.000473
- LIPO(Sec/SPII): 0.000793
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: CBW35758 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MAKDIRVLLYYLYTPIENAEQFAADHLAFCKSIGLKGRILVADEGINGTVSGDYETTQKYMDYVHSLPGMEELWFKIDEENEQAFKKMFVRYKKEIVHLGLEDNDFDNDINPLETTGAYLSPKEFKEALLDKDTVVLDTRNDYEYDLGHFRGAIRPDIRNFRELPQWVRDNKEKFMDKRVVVYCTGGVRCEKFSGWMVREGYKDVGQLHGGIATYGKDPEVQGELWDGKMYVFDERIAVDVNHVNPTIVGKDWFDGTPCERYVNCGNPFCNRRILTSEENEDKYLRGCSHECRVHPRNRYVSKNELTQAEVIERLAAIGESLDQAATV
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0091 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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