PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

NCBI: 13-DEC-2020

⊟Summary

• organism: Streptococcus pneumoniae INV104
• locus tag: INV104_RS00450 [old locus tag: INV104_00720 ]
• pan locus tag^?: PNEUPAN000754000
• symbol: INV104_RS00450
• pan gene symbol^?: ABC-MSP_2
• synonym:
• product: carbohydrate ABC transporter permease

⊟Genome View

⊟Gene

⊟General

• type: CDS
• locus tag: INV104_RS00450 [old locus tag: INV104_00720 ]
• symbol: INV104_RS00450
• product: carbohydrate ABC transporter permease
• replicon: chromosome
• strand: +
• coordinates: 87083..88006
• length: 924
• essential: unknown

⊟Accession numbers

• Location: NC_017591 (87083..88006) NCBI
• BioCyc: INV104_RS00450 BioCyc
• MicrobesOnline:
• PneumoBrowse for strain D39V: SPV_0089 PneumoBrowse

⊟Phenotype

Share your knowledge and add information here. [edit]

⊟DNA sequence

• 1
  61
  121
  181
  241
  301
  361
  421
  481
  541
  601
  661
  721
  781
  841
  901
  
  ATGGCAAAAAAGAAAATTAAAAAAGAAAAAATTGATAATGTCGGCATTCACTCCTTCAGT
  AAGAAAGCAGATATCTTCTTCAGTATCATTTCGGGTTTGATTGCCCTCTCTTGTATCCTA
  CCTTTTGTATTCGTTATCATTATTTCAGTGACAGACGAGAAAAGCCTCCTCCAATACGGC
  TATAGCTTCTTCCCATCCCAATTTGGCTTAGACGGTTTTGAGTTTTTGGCACAGTTTAAG
  GATAAAATCCTACAAGCCCTCTTCATCTCTGTCTTTGTAACCGTAGTTGGGACATTGACA
  AATGTCTTTATCACAACAACCTATGCCTACGCTATTTCACGGACAACCTTTAAGTATCGC
  AGATTTTTTACCATCTTCGTCCTTCTCAGTATGTTGTTCAACGCTGGTTTGGTACCAGGT
  TATATCATGGTGACCCGTGTACTTCAGCTTGGTGACACTGTTTGGGCCTTGATTGTTCCA
  ATGCTTCTCTCACCATTCAATATCATCTTGATGCGTTCTTTTTTCAAGAAGACCATTCCA
  GAAGCCATTCTCGAATCGGCTCGTATCGATGGTGCCAGTGAGGCTCGGATTTTCTTCCAA
  ATCTGTTTGCCATTGTCACTACCAGGTATCGCAACCATCACGCTTTTGACAGCTCTTGGT
  TTCTGGAATGACTGGTTCAACGCCCTTCTTTACATCAAGAGTGATAACTTGTATCCATTG
  CAATATTTGCTCATGCAAATCCAACAAAATATGGACTACATTGCCAAAGCGGTCGGCTTG
  ACTGGTCAACTGGGAGTTGCTCTACCGAAAGAAACAGGTCGTATGGCCATGGTTGTGGTA
  GCAACCCTTCCAATCGCGATTTTGTATCCATTCTTCCAACGCTACTTTGTAAAAGGTTTG
  ACTATCGGTGGTGTGAAAGAATAG
  60
  120
  180
  240
  300
  360
  420
  480
  540
  600
  660
  720
  780
  840
  900
  924
  

⊟Protein

⊟General

• locus tag: INV104_RS00450 [old locus tag: INV104_00720 ]
• symbol: INV104_RS00450
• description: carbohydrate ABC transporter permease
• length: 307
• theoretical pI: 9.92942
• theoretical MW: 34533
• GRAVY: 0.676547

⊟Function

• TIGRFAM:
  Metabolism Transport and binding proteins Anions molybdate ABC transporter, permease protein (TIGR02141; HMM-score: 30.2)
  NifC-like ABC-type porter (TIGR01581; HMM-score: 27.9)
  and 3 more
  Metabolism Transport and binding proteins Amino acids, peptides and amines putative 2-aminoethylphosphonate ABC transporter, permease protein (TIGR03262; HMM-score: 21.4)
  Cellular processes Cellular processes Pathogenesis type III secretion apparatus protein, YscI/HrpB, C-terminal domain (TIGR02497; HMM-score: 15.8)
  Genetic information processing Protein fate Protein and peptide secretion and trafficking type III secretion apparatus protein, YscI/HrpB, C-terminal domain (TIGR02497; HMM-score: 15.8)
• TheSEED: see INV104_00720
• PFAM:
  BPD_transp_1 (CL0404) BPD_transp_1; Binding-protein-dependent transport system inner membrane component (PF00528; HMM-score: 63.8)
  and 2 more
  no clan defined Vma12; Endoplasmic reticulum-based factor for assembly of V-ATPase (PF11712; HMM-score: 11)
  DUF3290; Protein of unknown function (DUF3290) (PF11694; HMM-score: 9.7)

⊟Structure, modifications & cofactors

• domains:
• modifications:
• cofactors:
• effectors:

⊟Localization

• PSORTb: Cytoplasmic Membrane
  • Cytoplasmic Score: 0
  • Cytoplasmic Membrane Score: 10
  • Cellwall Score: 0
  • Extracellular Score: 0
  • Internal Helices: 6
• SignalP: no predicted signal peptide
  • SP(Sec/SPI): 0.005804
  • TAT(Tat/SPI): 0.000329
  • LIPO(Sec/SPII): 0.079267
• predicted transmembrane helices (TMHMM): 6

⊟Accession numbers

• GI:
• RefSeq: WP_001075102 NCBI
• UniProt:

⊟Protein sequence

• MAKKKIKKEKIDNVGIHSFSKKADIFFSIISGLIALSCILPFVFVIIISVTDEKSLLQYGYSFFPSQFGLDGFEFLAQFKDKILQALFISVFVTVVGTLTNVFITTTYAYAISRTTFKYRRFFTIFVLLSMLFNAGLVPGYIMVTRVLQLGDTVWALIVPMLLSPFNIILMRSFFKKTIPEAILESARIDGASEARIFFQICLPLSLPGIATITLLTALGFWNDWFNALLYIKSDNLYPLQYLLMQIQQNMDYIAKAVGLTGQLGVALPKETGRMAMVVVATLPIAILYPFFQRYFVKGLTIGGVKE

⊟Experimental data

• protein localization:
• interaction partners:

⊟Expression & Regulation

⊟Operon

⊟Regulation

• data available for TIGR4

⊟Expression data

• PneumoExpress for strain D39V: SPV_0089 PneumoExpress

⊟Biological Material

⊟Mutants

⊟Expression vector

⊟lacZ fusion

⊟GFP fusion

⊟two-hybrid system

⊟FLAG-tag construct

⊟Antibody

⊟Other Information

You are kindly invited to share additional interesting facts.

⊟Literature

⊟References

⊟Relevant publications