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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 11-FEB-2025
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae INV104
- locus tag: INV104_RS04185 [old locus tag: INV104_07140 ]
- pan locus tag?: PNEUPAN001815000
- symbol: INV104_RS04185
- pan gene symbol?: msrC
- synonym:
- product: GAF domain-containing protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: INV104_RS04185 [old locus tag: INV104_07140 ]
- symbol: INV104_RS04185
- product: GAF domain-containing protein
- replicon: chromosome
- strand: +
- coordinates: 795386..795883
- length: 498
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: NC_017591 (795386..795883) NCBI
- BioCyc: INV104_RS04185 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0759 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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421
481ATGTTAAAATCAGAAAAACAATCACGTTATCAAATGTTAAATGAAGAATTGTCCTTCCTA
TTGGAAGGCGAAACCAATGTTTTGGCTAATCTTTCCAACGCCAGTGCTCTTATAAAATCA
CGTTTTCCTAATACCGTATTTGCAGGCTTTTATTTGTTCGATGGAAAGGAATTGGTTTTA
GGTCCCTTCCAAGGAGGTGTTTCCTGCATCCGTATTGCACTAGGCAAGGGTGTTTGTGGT
GAGGCAGCTCACTTTCAGGAAACTGTTATTGTTGGAGATGTGACGACCTATCTCAACTAT
ATTTCTTGTGATAGTCTAGCTAAAAGTGAAATTGTGGTGCCGATGATGAAGAATGGTCAG
TTACTTGGAGTTCTGGATCTGGATTCTTCAGAGATTGAGGATTACGATGCTATGGATCGA
GATTATTTGGAACAATTTGTCGCTATTTTGCTTGAAAAGACAACATGGGACTTTACGATG
TTTGAGGAAAAATCTTAA60
120
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498
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: INV104_RS04185 [old locus tag: INV104_07140 ]
- symbol: INV104_RS04185
- description: GAF domain-containing protein
- length: 165
- theoretical pI: 4.14184
- theoretical MW: 18420.9
- GRAVY: 0.0454545
⊟Function[edit | edit source]
- TIGRFAM: Central intermediary metabolism Nitrogen fixation Nif-specific regulatory protein (TIGR01817; HMM-score: 11.5)Regulatory functions DNA interactions Nif-specific regulatory protein (TIGR01817; HMM-score: 11.5)
- TheSEED: see INV104_07140
- PFAM: GAF (CL0161) GAF_2; GAF domain (PF13185; HMM-score: 38.6)and 1 moreGAF; GAF domain (PF01590; HMM-score: 24.8)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9803
- Cytoplasmic Membrane Score: 0.0023
- Cell wall & surface Score: 0.0009
- Extracellular Score: 0.0165
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.015905
- TAT(Tat/SPI): 0.003975
- LIPO(Sec/SPII): 0.00058
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000920158 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MLKSEKQSRYQMLNEELSFLLEGETNVLANLSNASALIKSRFPNTVFAGFYLFDGKELVLGPFQGGVSCIRIALGKGVCGEAAHFQETVIVGDVTTYLNYISCDSLAKSEIVVPMMKNGQLLGVLDLDSSEIEDYDAMDRDYLEQFVAILLEKTTWDFTMFEEKS
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0759 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]