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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 11-FEB-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae INV104
  • locus tag: INV104_RS09105 [old locus tag: INV104_15830 ]
  • pan locus tag?: PNEUPAN003361000
  • symbol: INV104_RS09105
  • pan gene symbol?: exoA
  • synonym:
  • product: exodeoxyribonuclease III

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: INV104_RS09105 [old locus tag: INV104_15830 ]
  • symbol: INV104_RS09105
  • product: exodeoxyribonuclease III
  • replicon: chromosome
  • strand: +
  • coordinates: 1735333..1736160
  • length: 828
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_017591 (1735333..1736160) NCBI
  • BioCyc: INV104_RS09105 BioCyc
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1626 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    ATGAAACTTATCTCATGGAATATTGATTCCCTAAACGCTGCCCTAACTAGTGACTCAGCT
    CGTGCCAAATTGTCCCAAGAAGTCCTACAAACCTTGGTCGCTGAAAATGCTGATATCATT
    GCTATCCAAGAAACCAAGCTTTCTGCCAAAGGACCTACAAAGAAACACGTGGAAATTTTA
    GAAGAACTCTTCCCAGGCTACGAAAACACGTGGCGCTCTTCCCAAGAGCCTGCCCGTAAA
    GGCTATGCTGGAACCATGTTCCTTTATAAGAAAGAACTTACACCCACTATCAGCTTCCCA
    GAAATCGGTGCCCCTTCTACCATGGACTTGGAAGGCCGTATCATCACTCTAGAATTTGAT
    GCATTTTTCGTAACCCAAGTTTACACTCCAAACGCTGGTGACGGTCTCAAACGCTTGGAA
    GAACGCCAAGTCTGGGATGTCAAATATGCGGAGTATTTGGCTGAACTAGACAAAGAAAAA
    CCAGTCCTTGCGACCGGTGACTACAACGTAGCCCACAATGAAATCGACCTTGCAAATCCT
    GCTAGCAACCGCCGTTCACCTGGATTTACTGACGAGGAACGTGCTGGATTTACCAACCTA
    TTGGCAACTGGATTTACTGATACCTTCCGCCATGTTCATGGCGATGTTCCTGAACGCTAC
    ACTTGGTGGGCACAACGCAGCAAAACTTCTAAAATCAACAATACAGGCTGGAGAATCGAC
    TACTGGCTCACAAGTAACCGTATCGCTGACAAGGTCACTAAATCTGATATGATTGACTCA
    GGTGCTCGCCAAGACCATACACCGATTGTCTTGGAAATTGACTTGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    828

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: INV104_RS09105 [old locus tag: INV104_15830 ]
  • symbol: INV104_RS09105
  • description: exodeoxyribonuclease III
  • length: 275
  • theoretical pI: 4.97026
  • theoretical MW: 31091.7
  • GRAVY: -0.506545

⊟Function[edit | edit source]

  • reaction:
    EC 3.1.11.2?  ExPASy
    Exodeoxyribonuclease III Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates
  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair exodeoxyribonuclease III (xth) (TIGR00633; EC 3.1.11.2; HMM-score: 289.5)
    and 1 more
    Genetic information processing DNA metabolism DNA replication, recombination, and repair exodeoxyribonuclease III (TIGR00195; EC 3.1.11.2; HMM-score: 187.5)
  • TheSEED: see INV104_15830
  • PFAM:
    DNase_I-like (CL0530) Exo_endo_phos; Endonuclease/Exonuclease/phosphatase family (PF03372; HMM-score: 57.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9882
    • Cytoplasmic Membrane Score: 0.0002
    • Cell wall & surface Score: 0.0003
    • Extracellular Score: 0.0112
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.018944
    • TAT(Tat/SPI): 0.000762
    • LIPO(Sec/SPII): 0.001182
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000767469 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPTKKHVEILEELFPGYENTWRSSQEPARKGYAGTMFLYKKELTPTISFPEIGAPSTMDLEGRIITLEFDAFFVTQVYTPNAGDGLKRLEERQVWDVKYAEYLAELDKEKPVLATGDYNVAHNEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDTFRHVHGDVPERYTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVTKSDMIDSGARQDHTPIVLEIDL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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