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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 02-OCT-2023
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae BVJ1JL
- locus tag: JN057_00587 [new locus tag: JN057_RS02850 ]
- pan locus tag?: PNEUPAN001460000
- symbol: JN057_00587
- pan gene symbol?: tnp (pseudogene)
- synonym:
- product: IS3 family transposase ISSpn11
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: JN057_00587 [new locus tag: JN057_RS02850 ]
- symbol: JN057_00587
- product: IS3 family transposase ISSpn11
- replicon: chromosome
- strand: -
- coordinates: 534746..535639
- length: 894
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP071871 (534746..535639) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_2178 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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841ATGAACTACACCCCAAAAGTTAGACAGAAAAAATCTAACTTTTGGGGTGTTTTTATTATG
AAATTAAGTTATGATGATAAAGTTCAGATCTATGAACTTAGAAAACAAGGATATAGCTTA
GAGAAGCTTTCAAATAAATTTGGGATAAACAATTCTAATATTAGGTACATGATTAAATTG
ATTGATCGTTATGGAATAGAGTTCGTCAAAAAAGGAAAAAATCGTTACTATTCTCCTGAT
TTAAAACAAGAAATGATTAATAAAGTCTTACATGAAGGCTGGACTAAAGATAGAGTTTCT
CTTGAATACGGTCTCCCAAGTCGTACGATACTTCTTAACTGGCTAGCACAATACAGGAAA
AACGGGTATACTATTGTTGAGAAAACAAGAGGGAGAGTACCTGAGAGCGGAGAATGCCAT
CCTAAAAAAGTTAAGAGAACTCCGATTGAAGGAGGAAAAAGAGAAAGAAGAAAGACAGAA
ATTGTTCAAGAATTAATGACTGAGTTTTCGTTAGATCTTCTTCTAAAAGCTATTAAACTA
GCTCGTTGGACCTACTACTATCACTTGAAACAGCTAGACAAACCAGATAAGGACCAAGAG
CTTAAAGCTGAAATTCAATCCATTTTTATCGAACACAAGGGAAATTATGCTTATCGCTGT
ATTCATTTAGAACTAAGAAATCGTGCTTATCTGGTAAATCATAAAAGAGTTCAAGGCTTG
ATGAAAGTACTCAATTTACAAGCTAAAACGCGACAGAAACGAAAATATTCTTCTCATAAA
GGAGACGTTGGCAAGAAGGCAGAGAATCTCATTCAAGGCCAATTTGAAGGCTCTAAAACA
ATGGAACAGTGCTACACAGATGTGACTGAATTTGCCATTCCAGTAAGTACTTAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: JN057_00587 [new locus tag: JN057_RS02850 ]
- symbol: JN057_00587
- description: IS3 family transposase ISSpn11
- length: 297
- theoretical pI: 10.3427
- theoretical MW: 35188.6
- GRAVY: -0.798653
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED:
- PFAM: HTH (CL0123) HTH_21; HTH-like domain (PF13276; HMM-score: 57.9)and 12 moreHTH_28; Helix-turn-helix domain (PF13518; HMM-score: 22.9)HTH_23; Homeodomain-like domain (PF13384; HMM-score: 22.4)Bot1p; Eukaryotic mitochondrial regulator protein (PF12298; HMM-score: 17.7)HTH_38; Helix-turn-helix domain (PF13936; HMM-score: 17.7)HTH_Tnp_1; Transposase (PF01527; HMM-score: 16.4)HTH_35; Winged helix-turn-helix DNA-binding (PF13693; HMM-score: 15.5)MerR_1; MerR HTH family regulatory protein (PF13411; HMM-score: 14.8)B-block_TFIIIC; B-block binding subunit of TFIIIC (PF04182; HMM-score: 13.5)LZ_Tnp_IS481; leucine-zipper of insertion element IS481 (PF13011; HMM-score: 13.2)ADF (CL0092) Cofilin_ADF; Cofilin/tropomyosin-type actin-binding protein (PF00241; HMM-score: 12.5)HTH (CL0123) HTH_psq; helix-turn-helix, Psq domain (PF05225; HMM-score: 11.7)no clan defined Endotoxin_N; delta endotoxin, N-terminal domain (PF03945; HMM-score: 9.1)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9328
- Cytoplasmic Membrane Score: 0.0006
- Cell wall & surface Score: 0.0268
- Extracellular Score: 0.0398
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.008759
- TAT(Tat/SPI): 0.000212
- LIPO(Sec/SPII): 0.001036
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: QTE32221 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MNYTPKVRQKKSNFWGVFIMKLSYDDKVQIYELRKQGYSLEKLSNKFGINNSNIRYMIKLIDRYGIEFVKKGKNRYYSPDLKQEMINKVLHEGWTKDRVSLEYGLPSRTILLNWLAQYRKNGYTIVEKTRGRVPESGECHPKKVKRTPIEGGKRERRKTEIVQELMTEFSLDLLLKAIKLARWTYYYHLKQLDKPDKDQELKAEIQSIFIEHKGNYAYRCIHLELRNRAYLVNHKRVQGLMKVLNLQAKTRQKRKYSSHKGDVGKKAENLIQGQFEGSKTMEQCYTDVTEFAIPVST
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_2178 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]