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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 02-OCT-2023

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae BVJ1JL
  • locus tag: JN057_01977 [new locus tag: JN057_RS09650 ]
  • pan locus tag?: PNEUPAN003602000
  • symbol: rsmA
  • pan gene symbol?: ksgA
  • synonym:
  • product: Ribosomal RNA small subunit methyltransferase A

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JN057_01977 [new locus tag: JN057_RS09650 ]
  • symbol: rsmA
  • product: Ribosomal RNA small subunit methyltransferase A
  • replicon: chromosome
  • strand: -
  • coordinates: 1863116..1863988
  • length: 873
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP071871 (1863116..1863988) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_1782 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGAGAATTGCAGATTATAGCGTGACCAAGGCAGTGCTGGAGCGTCACGGTTTTACCTTT
    AAAAAGTCCTTTGGGCAAAATTTCTTGACGGATACCAATATCCTACAAAAAATCGTGGAT
    ACGGCTGAGATTGATGACCAGGTCAATGTCATTGAAATCGGGCCAGGTATTGGTGCCTTG
    ACCGAGTTTTTGGCTGAGCGTGCAGCAGAAGTTATGGCCTTTGAGATCGACCATCGTTTG
    GTACCGATTTTGGCAGATACCTTGCGTGATTTTGACAATGTGACTGTAGTCAACGAGGAC
    ATTCTCAAGGTCGATTTGGCGCAACATATCCAGAATTTCAAAAATCCTGACCTGCCAATC
    AAGGTAGTGGCTAATTTGCCTTACTACATCACAACGCCTATTCTCATGCACTTAATCGAG
    AGTGGCATTCCTTTTAGTGAGTTTGTGGTCATGATGCAAAAAGAAGTGGCGGACCGTATC
    TCGGCTCAACCAAATACCAAGGCTTACGGTAGCTTGTCTATCGCTGTGCAGTATTACATG
    ACAGCCAAGGTTGCCTTTATCGTGCCGCGTACAGTCTTTGTGCCAGCACCAAATGTAGAC
    TCAGCCATCTTGAAAATGGTGCGCCGTCCAGTGCCAGCTGTAGCAGTGGAAGACGAGAAC
    TTTTTCTTTAAGGTTTCCAAGGCTAGTTTTACCCATCGCCGCAAGACCTTGTGGAATAAC
    TTGACAGGTTACTTTGGCAAGACTGAAGAGGTCAAGGACAAGCTGACCAAGGCTTTGGAC
    CAAGCAGGCTTGTCACCAAGTGTGCGTGGGGAAGCTCTCAGCTTGGAAGAGTTTGCCAGC
    CTAGCAGATGCACTTAAAGGGCAAGGACTCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    873

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JN057_01977 [new locus tag: JN057_RS09650 ]
  • symbol: RsmA
  • description: Ribosomal RNA small subunit methyltransferase A
  • length: 290
  • theoretical pI: 5.71467
  • theoretical MW: 32280
  • GRAVY: 0.0437931

⊟Function[edit | edit source]

  • reaction:
    EC 2.1.1.182?  ExPASy
    16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase 4 S-adenosyl-L-methionine + adenine1518/adenine1519 in 16S rRNA = 4 S-adenosyl-L-homocysteine + N6-dimethyladenine1518/N6-dimethyladenine1519 in 16S rRNA
  • TIGRFAM:
    Genetic information processing Protein synthesis tRNA and rRNA base modification ribosomal RNA small subunit methyltransferase A (TIGR00755; EC 2.1.1.182; HMM-score: 283.1)
    and 9 more
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Chlorophyll and bacteriochlorphyll magnesium protoporphyrin O-methyltransferase (TIGR02021; EC 2.1.1.11; HMM-score: 18.8)
    Unknown function Enzymes of unknown specificity putative methylase (TIGR00537; HMM-score: 18.1)
    Genetic information processing Protein synthesis tRNA and rRNA base modification 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR00479; EC 2.1.1.-; HMM-score: 17)
    methyltransferase, ATP-grasp peptide maturase system (TIGR04188; HMM-score: 13.9)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Heme, porphyrin, and cobalamin precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit (TIGR02469; EC 2.1.1.132; HMM-score: 12.7)
    Genetic information processing Protein fate Protein modification and repair protein-(glutamine-N5) methyltransferase, release factor-specific (TIGR03534; EC 2.1.1.-; HMM-score: 12.6)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Menaquinone and ubiquinone 3-demethylubiquinone-9 3-O-methyltransferase (TIGR01983; EC 2.1.1.64; HMM-score: 12)
    Metabolism Biosynthesis of cofactors, prosthetic groups, and carriers Biotin malonyl-acyl carrier protein O-methyltransferase BioC (TIGR02072; EC 2.1.1.-; HMM-score: 12)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides putative sugar O-methyltransferase (TIGR04371; EC 2.1.1.-; HMM-score: 11.8)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    NADP_Rossmann (CL0063) RrnaAD; Ribosomal RNA adenine dimethylase (PF00398; HMM-score: 219.9)
    and 7 more
    Methyltransf_23; Methyltransferase domain (PF13489; HMM-score: 19.4)
    Methyltransf_25; Methyltransferase domain (PF13649; HMM-score: 16.9)
    Methyltransf_11; Methyltransferase domain (PF08241; HMM-score: 16.2)
    Methyltransf_31; Methyltransferase domain (PF13847; HMM-score: 14.3)
    Methyltransf_12; Methyltransferase domain (PF08242; HMM-score: 13.2)
    NodS; Nodulation protein S (NodS) (PF05401; HMM-score: 13)
    MTS; Methyltransferase small domain (PF05175; HMM-score: 12.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 9.97
    • Cytoplasmic Membrane Score: 0
    • Cellwall Score: 0.01
    • Extracellular Score: 0.02
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9982
    • Cytoplasmic Membrane Score: 0.0002
    • Cell wall & surface Score: 0.0001
    • Extracellular Score: 0.0015
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.002222
    • TAT(Tat/SPI): 0.000191
    • LIPO(Sec/SPII): 0.000348
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: QTE33522 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MRIADYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAAEVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNFKNPDLPIKVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPVPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLEEFASLADALKGQGL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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