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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 08-APR-2025

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae BVJ1JL
  • locus tag: JN057_RS05245 [old locus tag: JN057_01075 ]
  • pan locus tag?: PNEUPAN002011000
  • symbol: JN057_RS05245
  • pan gene symbol?: recF_1
  • synonym:
  • product: AAA family ATPase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: JN057_RS05245 [old locus tag: JN057_01075 ]
  • symbol: JN057_RS05245
  • product: AAA family ATPase
  • replicon: chromosome
  • strand: +
  • coordinates: 1011123..1013783
  • length: 2661
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_CP071871 (1011123..1013783) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    GTGAAAATCAAGAAGATTTTACTTTATAATTTTAAGAATTTTAGACATGAAACGGTTATT
    GATTTTAGTGATAACATGACTTTCTTAGTTGGACCAAACGGATTTGGAAAGACGACTATT
    TTTGATGCAATAGAGCTAGGTTTGACAGGTGATATTTCTCGAATCAATCAAAATAATCCA
    GTGACTGGAGAAAATATCAAGTATAATAAACCTTTCTTCCAAAATGATATTTCTGAACCA
    GTGATTATAAAATTATGGTTGGAAAAATCAAATGTTAATCAATTGGTTCTTGTTCGAAAG
    TTGATAAATGATAGGCCAGACGGTGGAATTTTATACGCTCCGAAGAGGTCTATCGGTCAG
    TTTAAGTTGTTTCGGCAGGAAGAAGCAACTGATGAAAACTTTAGTAGCTTAGATAATGAT
    ATTAAATTGTCTGAAATAGACCAGACTACAATTGATAATTTTTTAGAGATTGATGGGGAA
    TATAAACTTGCTAAGATTTTTAATCTGTTTAACTATATTCAGCAAGAAGAAACGACATTT
    TTCTTGAAAAAATCTGAGAAAGATAGAAGTAACGATCTCTCATTTTTGGTAAAAACTGAT
    GAGATAGAAGATAGAATAAGTAAGATTGAAAAAGTAAATAAAGCTATCAACGATAATCTG
    AAATCCCTTACTGAGCAACAAGAGAAACTTACTCAGCAAGAACTGGATAACATCCCCTAT
    CAAAGGTTGTTTAATCAACAGGTCTTTCAGTTTGATAAAGAAAGTCCGTTTTCTGTAGAC
    AACCTCAGTCAGTCAGATGATTTTAAAGTTACTATTCAAAAGATTATTGAATTTAAACAG
    AGTTTTTCTATTTCTGAATATCAACGAAAGTTGGAAAGAGATAACCGAAAGAAAGAAATC
    AATACTATTGATAGCGCTTTACGCTTTGCTATTTTATTTTCACTTATTCAAAGACCTAAT
    TATCAATGGCAGTGGGAAAAATACACTATAGAGAATCCGAGATTCTTTGAATACGTACTT
    TTAGAAAATTACCTTCAAACATTTGAGACTATCACTCATGAATATAGGCGAAAACAACAA
    TTAAATCAATACTGGGAGGATCTATCTACTGATATTAATCAAATGACAGCGCAGACTTTT
    CAGTATGTTCAAAATGATAGGTTATCAAATGATTTTGAATCACTTAAAGTTCAATTAACA
    AGCTACCAGACGCTAAGAGAAAGTGTTGGACAAGCAGATAAAAATTTAAGTGATTTACGA
    CAGTTACGGAGAAAATTAGGTGAAAAATTTGATGAGCTAAGACAACATAATCATGTTGAT
    GAAGATAGATGTCCATTTTGTAACAATCAGTTTGATTCTTTCGTTGACTTGAAGAGTTCT
    TATGATAATTATACAGATTACTTAACTGAAATTTCATCTAGAGATAGTCAGCGATTACAA
    GAAGTTCAATTATCATTGAATTCAAGAATCCAACAAGTGAAGCAAAAAATCACTGATGAA
    ATAAACAGTCTTACTACCAACATAGATAAAAAACTATTAGATAGATTACAAGAATTGAGC
    GGTTCGTACCAAAGTTATTCTAAATATCTTGAGGATTTTAAAACTTTTATTCAGTCGTAT
    ACTAATATGGCACCTTATCAACTGGAGAATTTAGAATTTGATAACTATAATCATCAGTAT
    AAATCTAGCTTACAAGAGTTTCGATCTAAATTGGTAGTTGATGATGATGTTTATAGGGTT
    TTAGATATTAATAGTCTGGAAAATATAAAGGGACAACTGGGCGACTTAAGAGAAGAATTT
    CCTGAATTGCAGTTTGAAACATACCAATTAGAATCAAGTTCATATTCGAAGATAAATATG
    GCGATGATTAATAGTCGATTGCATGAATTAAAACAGGCTATCCACTTAGCAATTGACGAA
    AAGTATGCCATTAATGAGAATTTGATAGCAGATGCTGAGAATATATTTCCTACATATTTT
    CAAAGTAAAGTGGAAGTATTAGAGGATATTCGTATTGGAGATCTAGAGGAGAAGAAACTC
    TATATAGATAAGCAGTATAAACTAGTTCAAAATCAACAGTTCCAAGACTTATCACGTCGA
    ATAAAAATATTGGAAAAAACTGCAGAACGGTTAAAAGAAATTCATACTATATATAAAGAA
    GAGGTGAAAAAGTTCAAAATAGGCATTGTTAAACAACTACGCATCCCATTCTTCATATAC
    TCAGCAAAAATGTTGCAAAATTATCAACAAGGTATGGGGATTTTCTTAACGTACAAGAAA
    ACAACGAGTAGTGATAATGAAACGGTAGCAATTATTAGATTTAAATCCGACACTAAAAAT
    GATCATGATGTAATGAATCAGCTAAGTACGGGGCAGTTAGCTGTTGTGTCGCTTGCATTT
    ACTTTATCTCTGAATACTATGTTTAAGTTATCTGATAATTTAAATTTCCTGATGATAGAT
    GATCCTATTCAGGATATGGATGCAATGAATGTATTGTCCTTTATTGAGATTTTGCGTCAC
    GGGATTATAGATAGATATCAAATTATTTTATCAACGTATAGTGACCATAATGCTCTATTT
    ATGGGATATAAGTTTGCAAATTCATATCCAAAAGTTGACATTGACTATAAGAATGTCCGT
    GAATTAAAAGGTTCTTTATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1140
    1200
    1260
    1320
    1380
    1440
    1500
    1560
    1620
    1680
    1740
    1800
    1860
    1920
    1980
    2040
    2100
    2160
    2220
    2280
    2340
    2400
    2460
    2520
    2580
    2640
    2661

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: JN057_RS05245 [old locus tag: JN057_01075 ]
  • symbol: JN057_RS05245
  • description: AAA family ATPase
  • length: 886
  • theoretical pI: 5.08829
  • theoretical MW: 104770
  • GRAVY: -0.62088

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02168; HMM-score: 44)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02168; HMM-score: 44)
    and 11 more
    Cellular processes Cellular processes Cell division chromosome segregation protein SMC (TIGR02169; HMM-score: 33.6)
    Genetic information processing DNA metabolism Chromosome-associated proteins chromosome segregation protein SMC (TIGR02169; HMM-score: 33.6)
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA replication and repair protein RecF (TIGR00611; HMM-score: 28.8)
    Metabolism Transport and binding proteins Amino acids, peptides and amines urea ABC transporter, ATP-binding protein UrtD (TIGR03411; HMM-score: 18.2)
    Metabolism Transport and binding proteins Cations and iron carrying compounds cobalt ABC transporter, ATP-binding protein (TIGR01166; HMM-score: 15.3)
    Metabolism Transport and binding proteins Unknown substrate anchored repeat-type ABC transporter, ATP-binding subunit (TIGR03771; HMM-score: 15.3)
    Cell structure Cell envelope Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 14.6)
    Metabolism Transport and binding proteins Other LPS export ABC transporter ATP-binding protein (TIGR04406; HMM-score: 14.6)
    Genetic information processing Protein fate Protein and peptide secretion and trafficking heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 12.5)
    Metabolism Transport and binding proteins Other heme ABC exporter, ATP-binding protein CcmA (TIGR01189; EC 3.6.3.41; HMM-score: 12.5)
    Cellular processes Cellular processes Chemotaxis and motility flagellar biosynthesis protein FlhF (TIGR03499; HMM-score: 4.5)
  • TheSEED:
  • PFAM:
    P-loop_NTPase (CL0023) AAA_23; AAA domain (PF13476; HMM-score: 85.8)
    and 13 more
    SMC_N; RecF/RecN/SMC N terminal domain (PF02463; HMM-score: 56.8)
    AAA_15; AAA ATPase domain (PF13175; HMM-score: 36.2)
    AAA_29; P-loop containing region of AAA domain (PF13555; HMM-score: 31.7)
    no clan defined Apolipoprotein; Apolipoprotein A1/A4/E domain (PF01442; HMM-score: 25.6)
    P-loop_NTPase (CL0023) SbcC_Walker_B; SbcC/RAD50-like, Walker B motif (PF13558; HMM-score: 17.9)
    AAA_27; AAA domain (PF13514; HMM-score: 15.5)
    no clan defined Spectrin; Spectrin repeat (PF00435; HMM-score: 15.1)
    P-loop_NTPase (CL0023) MukB; MukB N-terminal (PF04310; HMM-score: 13.2)
    ABC_tran; ABC transporter (PF00005; HMM-score: 11.7)
    no clan defined Cys_rich_CPXG; Cysteine-rich CPXCG (PF14255; HMM-score: 11.6)
    P-loop_NTPase (CL0023) AAA_21; AAA domain, putative AbiEii toxin, Type IV TA system (PF13304; HMM-score: 11.2)
    no clan defined Baculo_PEP_C; Baculovirus polyhedron envelope protein, PEP, C terminus (PF04513; HMM-score: 10.1)
    DUF4988; Domain of unknown function (PF16378; HMM-score: 7.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helix: 1
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.3281
    • Cytoplasmic Membrane Score: 0.5187
    • Cell wall & surface Score: 0.0065
    • Extracellular Score: 0.1467
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.01094
    • TAT(Tat/SPI): 0.000155
    • LIPO(Sec/SPII): 0.000476
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_061370834 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKIKKILLYNFKNFRHETVIDFSDNMTFLVGPNGFGKTTIFDAIELGLTGDISRINQNNPVTGENIKYNKPFFQNDISEPVIIKLWLEKSNVNQLVLVRKLINDRPDGGILYAPKRSIGQFKLFRQEEATDENFSSLDNDIKLSEIDQTTIDNFLEIDGEYKLAKIFNLFNYIQQEETTFFLKKSEKDRSNDLSFLVKTDEIEDRISKIEKVNKAINDNLKSLTEQQEKLTQQELDNIPYQRLFNQQVFQFDKESPFSVDNLSQSDDFKVTIQKIIEFKQSFSISEYQRKLERDNRKKEINTIDSALRFAILFSLIQRPNYQWQWEKYTIENPRFFEYVLLENYLQTFETITHEYRRKQQLNQYWEDLSTDINQMTAQTFQYVQNDRLSNDFESLKVQLTSYQTLRESVGQADKNLSDLRQLRRKLGEKFDELRQHNHVDEDRCPFCNNQFDSFVDLKSSYDNYTDYLTEISSRDSQRLQEVQLSLNSRIQQVKQKITDEINSLTTNIDKKLLDRLQELSGSYQSYSKYLEDFKTFIQSYTNMAPYQLENLEFDNYNHQYKSSLQEFRSKLVVDDDVYRVLDINSLENIKGQLGDLREEFPELQFETYQLESSSYSKINMAMINSRLHELKQAIHLAIDEKYAINENLIADAENIFPTYFQSKVEVLEDIRIGDLEEKKLYIDKQYKLVQNQQFQDLSRRIKILEKTAERLKEIHTIYKEEVKKFKIGIVKQLRIPFFIYSAKMLQNYQQGMGIFLTYKKTTSSDNETVAIIRFKSDTKNDHDVMNQLSTGQLAVVSLAFTLSLNTMFKLSDNLNFLMIDDPIQDMDAMNVLSFIEILRHGIIDRYQIILSTYSDHNALFMGYKFANSYPKVDIDYKNVRELKGSL

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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