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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 05-OCT-2017
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae MDRSPN001
- locus tag: MDRSPN_00378 [new locus tag: MDRSPN_RS02025 ]
- pan locus tag?: PNEUPAN001291000
- symbol: fabF
- pan gene symbol?: fabF
- synonym:
- product: 3-oxoacyl-[acyl-carrier-protein] synthase 2
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: MDRSPN_00378 [new locus tag: MDRSPN_RS02025 ]
- symbol: fabF
- product: 3-oxoacyl-[acyl-carrier-protein] synthase 2
- replicon: chromosome
- strand: +
- coordinates: 376222..377457
- length: 1236
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: AP018391 (376222..377457) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0385 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1201ATGAAACTAAATCGAGTAGTGGTAACAGGTTATGGAGTAACATCTCCAATCGGAAATACA
CCAGAAGAATTTTGGAATAGTTTAGCAACTGGGAAAATCGGCATTGGTGGCATTACAAAA
TTTGATCATAGTGACTTTGATGTGCATAATGCGGCAGAAATCCAAGATTTTCCGTTCGAT
AAATACTTTGTAAAAAAAGATACCAACCGTTTTGATAACTATTCTTTATATGCCTTGTAT
GCAGCCCAAGAGGCTGTAAATCATGCCAATCTTGATGTAGAGGCTCTTAATAGGGATCGT
TTTGGTGTTATCGTTGCATCTGGTATTGGTGGAATCAAGGAAATTGAAGATCAGGTACTT
CGCCTTCATGAAAAAGGACCCAAACGTGTCAAACCAATGACTCTTCCAAAAGCTTTACCA
AATATGGCTTCTGGGAATGTAGCCATGCGTTTTGGTGCAAACGGTGTTTGTAAATCTATC
AATACTGCCTGCTCTTCATCAAATGATGCGATTGGGGATGCCTTCCGCTCCATTAAGTTT
GGTTTCCAAGATGTGATGTTGGTGGGAGGAACAGAAGCTTCTATCACACCTTTTGCCATC
GCTGGTTTCCAAGCCTTAACAGCTCTCTCTACTACAGAGGATCCAACTCGTGCTTCGATC
CCATTTGATAAGGATCGCAATGGGTTTGTTATGGGTGAAGGTTCAGGGATGTTGGTTCTA
GAAAGTCTTGAACACGCTGAAAAACGTGGAGCTACTATCCTGGCTGAAGTGGTTGGTTAC
GGAAATACTTGTGATGCCTACCACATGACTTCTCCACATCCAGAAGGTCAGGGAGCTATC
AAGGCCATCAAACTAGCCTTGGAAGAAGCTGAGATTTCTCCAGAGCAAGTAGCCTATGTC
AATGCTCACGGAACGTCAACTCCTGCCAATGAAAAAGGAGAAAGTGGTGCTATCGTAGCT
GTTCTTGGTAAGGAAGTACCTGTATCATCAACCAAGTCTTTTACAGGACATTTGCTGGGG
GCTGCGGGTGCAGTAGAAGCTATCGTCACCATCGAAGCTATGCGTCATAACTTTGTACCA
ATGACAGCTGGGACAAGTGAAGTATCAGATTATATCGAAGCTAATGTCGTTTATGGACAA
GGTTTGGAGAAAGAAATTCCATACGCTATTTCAAATACTTTTGGTTTTGGAGGCCACAAT
GCAGTTCTTGCTTTCAAACGTTGGGAGAATAGATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: MDRSPN_00378 [new locus tag: MDRSPN_RS02025 ]
- symbol: FabF
- description: 3-oxoacyl-[acyl-carrier-protein] synthase 2
- length: 411
- theoretical pI: 5.43076
- theoretical MW: 43931.3
- GRAVY: -0.118005
⊟Function[edit | edit source]
- TIGRFAM: Fatty acid and phospholipid metabolism Biosynthesis beta-ketoacyl-acyl-carrier-protein synthase II (TIGR03150; EC 2.3.1.179; HMM-score: 564.9)and 4 morepolyketide-type polyunsaturated fatty acid synthase PfaA (TIGR02813; HMM-score: 101.5)Fatty acid and phospholipid metabolism Other acetyl-CoA C-acyltransferase (TIGR01930; EC 2.3.1.16; HMM-score: 39.8)3-oxoadipyl-CoA thiolase (TIGR02430; EC 2.3.1.174; HMM-score: 21.3)Fatty acid and phospholipid metabolism Degradation acetyl-CoA C-acyltransferase FadA (TIGR02445; EC 2.3.1.16; HMM-score: 16.3)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: Thiolase (CL0046) ketoacyl-synt; Beta-ketoacyl synthase, N-terminal domain (PF00109; HMM-score: 189.8)and 2 moreKetoacyl-synt_C; Beta-ketoacyl synthase, C-terminal domain (PF02801; HMM-score: 106.9)Thiolase_N; Thiolase, N-terminal domain (PF00108; HMM-score: 28.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0.17
- Cytoplasmic Membrane Score: 9.51
- Cellwall Score: 0.16
- Extracellular Score: 0.15
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.026387
- TAT(Tat/SPI): 0.000973
- LIPO(Sec/SPII): 0.002855
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: BBA58584 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MKLNRVVVTGYGVTSPIGNTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKYFVKKDTNRFDNYSLYALYAAQEAVNHANLDVEALNRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITPFAIAGFQALTALSTTEDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESGAIVAVLGKEVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVVYGQGLEKEIPYAISNTFGFGGHNAVLAFKRWENR
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0385 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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