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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 05-OCT-2017

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae MDRSPN001
  • locus tag: MDRSPN_01150 [new locus tag: MDRSPN_RS06040 ]
  • pan locus tag?: PNEUPAN001795000
  • symbol: MDRSPN_01150
  • pan gene symbol?: pnrA
  • synonym:
  • product: BMP family ABC transporter substrate-binding protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: MDRSPN_01150 [new locus tag: MDRSPN_RS06040 ]
  • symbol: MDRSPN_01150
  • product: BMP family ABC transporter substrate-binding protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1171970..1173094
  • length: 1125
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: AP018391 (1171970..1173094) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0739 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    GTGGCACGGTCCTTGTGGCCAACCAATCCATACTTGCAACATCGTTGCACATCTTATTTA
    GGAGGTTCAGTAATGAACAAGAAACAATGGCTAGGCCTTGGTCTAGTTGCAGTGGCAGCA
    GTTGGACTTGCTGCATGTGGTAACCGCTCTTCTCGTAACGCAGCTTCATCTTCTGATGTG
    AAGACAAAAGCAGCAATCGTCACTGATACTGGTGGTGTTGATGACAAATCATTCAACCAA
    TCAGCTTGGGAAGGTTTGCAAGACTGGGGTAAAGAACACAATCTTTCAAAAGATAAAGGT
    TTCACTTACTTCCAATCAACAAGTGAAGCTGACTACGCTAACAACTTGCAACAAGCGGCT
    GGAAGCTACAACCTAATCTTCGGTGTTGGTTTTGCCCTTCACAATGCGGTTGAAGAAGCA
    GCAAAAGACCACTCTGATTTGAACTATGTCTTGATTGATGATGTGATTAAAGATCAAAAG
    AATGTTGCTAGCGTAACGTTTGCTGATAACGAAGCTGCTTACCTTGCGGGTGTTGCAGCA
    GCTAAAACAACTAAAACAAAACAAGTTGGTTTTGTAGGTGGTATTGAGTCTGAAGTTATC
    TCACGTTTTGCAGCTGGATTTAAAGCTGGTGTTGAGTCAGTAGATCCATCTATCAAAGTA
    CAAGTTGACTACGCAGGTTCATTTGGTGATGCTGCTAAAGGTAAAACAATTGCAGCAGCA
    CAATACGCAGCTGGTGCAGACGTTGTTTATCAAGCAGCAGGTGGAACAGGTGCTGGTGTC
    TTTGCAGAAGCAAAATCACTCAACGAAAGCCGTCCTGAAAATGAAAAAGTTTGGGTTATC
    GGTGTTGACCGTGACCAAGTAGGAGAAGGTAAGTACACTTCTAAAGATGGTAAAGAATCA
    AACTTCGTTCTTGTATCTACTTTGAAACAAGTTGGTACAACTGTAAAAGATATTGCTAAC
    AAAGCAGAAAAAGGTGAATTCCCTGGCGGTCAAGTGATCGTTTACTCATTGAAAGATAAA
    GGGGTTGACTTGGCAGTAACAAACCTTTCAGAAGAAGGTAAAAAAGCTGTTGAAGATGCT
    AAAGCTAAAATCCTTGATGGAAGCGTAAAAGTTCCTGAAAAATAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1125

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: MDRSPN_01150 [new locus tag: MDRSPN_RS06040 ]
  • symbol: MDRSPN_01150
  • description: BMP family ABC transporter substrate-binding protein
  • length: 374
  • theoretical pI: 5.81911
  • theoretical MW: 39401.7
  • GRAVY: -0.272193

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    Periplas_BP (CL0144) Bmp; ABC transporter substrate-binding protein PnrA-like (PF02608; HMM-score: 236.1)
    and 2 more
    no clan defined DUF6676; Family of unknown function (DUF6676) (PF20381; HMM-score: 17)
    MGS; MGS-like domain (PF02142; HMM-score: 15.4)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helix: 1
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0003
    • Cytoplasmic Membrane Score: 0.9364
    • Cell wall & surface Score: 0.0177
    • Extracellular Score: 0.0455
  • SignalP: Signal peptide LIPO(Sec/SPII) length 45 aa
    • SP(Sec/SPI): 0.051917
    • TAT(Tat/SPI): 0.031452
    • LIPO(Sec/SPII): 0.854839
    • Cleavage Site: CS pos: 45-46. LAA-CG. Pr: 0.8605
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: BBA59349 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MARSLWPTNPYLQHRCTSYLGGSVMNKKQWLGLGLVAVAAVGLAACGNRSSRNAASSSDVKTKAAIVTDTGGVDDKSFNQSAWEGLQDWGKEHNLSKDKGFTYFQSTSEADYANNLQQAAGSYNLIFGVGFALHNAVEEAAKDHSDLNYVLIDDVIKDQKNVASVTFADNEAAYLAGVAAAKTTKTKQVGFVGGIESEVISRFAAGFKAGVESVDPSIKVQVDYAGSFGDAAKGKTIAAAQYAAGADVVYQAAGGTGAGVFAEAKSLNESRPENEKVWVIGVDRDQVGEGKYTSKDGKESNFVLVSTLKQVGTTVKDIANKAEKGEFPGGQVIVYSLKDKGVDLAVTNLSEEGKKAVEDAKAKILDGSVKVPEK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Sneha Saxena, Naeem Khan, Ruchika Dehinwal, Ajay Kumar, Devinder Sehgal
Conserved surface accessible nucleoside ABC transporter component SP0845 is essential for pneumococcal virulence and confers protection in vivo.
PLoS One: 2015, 10(2);e0118154
[PubMed:25689507] [WorldCat.org] [DOI] (I e)Mohammed R Abdullah, María T Batuecas, Franziska Jennert, Franziska Voß, Philipp Westhoff, Thomas P Kohler, Rafael Molina, Stephanie Hirschmann, Michael Lalk, Juan A Hermoso, Sven Hammerschmidt
Crystal Structure and Pathophysiological Role of the Pneumococcal Nucleoside-binding Protein PnrA.
J Mol Biol: 2021, 433(2);166723
[PubMed:33242497] [WorldCat.org] [DOI] (I p)

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