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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 14-DEC-2020

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae MDRSPN001
  • locus tag: MDRSPN_RS01565 [old locus tag: MDRSPN_00293 ]
  • pan locus tag?: PNEUPAN001111000
  • symbol: MDRSPN_RS01565
  • pan gene symbol?: rpiB
  • synonym:
  • product: RpiB/LacA/LacB family sugar-phosphate isomerase

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: MDRSPN_RS01565 [old locus tag: MDRSPN_00293 ]
  • symbol: MDRSPN_RS01565
  • product: RpiB/LacA/LacB family sugar-phosphate isomerase
  • replicon: chromosome
  • strand: -
  • coordinates: 284178..284819
  • length: 642
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: NZ_AP018391 (284178..284819) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0291 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGAAAATCGCATTAATCAATGAAAATAGTCAAGCTAGTAAGAATCACATTATTTACGAT
    AGTCTAAAAGAAGCAACAGATAAAAAAGGCTACCAATTATTTAACTATGGTATGCGTGGA
    GAAGAAGGTGAAAACCCATTAACATACGTACAAAACGGCCTAATGGCTGCCATCCTTTTA
    AATACAAAAGCAGTCGACTTTGTTGTTACCGGCTGTGGTACGGGTGTAGGAGCTATGCTT
    GCTTTAAACAGCTTCCCTGGTGTTGTCTGTGGTCTAGCAGTGGACCCAACTGACGCTTAC
    CTTTATTCTCAAATCAATGGTGGTAACGCCTTGTCTATCCCTTATGCCAAAGGATTTGGC
    TGGGGGGCAGAACTGACCCTCAAATTGATGTTTGAACGCTTATTTGCTGAAGAAATGGGC
    GGTGGCTACCCAAGAGAACGTGTAATCCCTGAACAACGCAACGCTCGTATCTTAAACGAG
    GTGAAACAAATCACCTACAATGATTTGATGACCATCCTTAAAACAATCGACCAAGACTTC
    CTCAAAGACACCATCTCTGGCAAATACTTCCAAGAATACTTCTTTGAAAACTGCCAAGAT
    GATGAAGTCGCTGCTTATTTGAAAGAAGTATTAGCCAAGTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    642

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: MDRSPN_RS01565 [old locus tag: MDRSPN_00293 ]
  • symbol: MDRSPN_RS01565
  • description: RpiB/LacA/LacB family sugar-phosphate isomerase
  • length: 213
  • theoretical pI: 4.57661
  • theoretical MW: 23687.9
  • GRAVY: -0.157277

⊟Function[edit | edit source]

  • TIGRFAM:
    sugar-phosphate isomerase, RpiB/LacA/LacB family (TIGR00689; EC 5.3.1.-; HMM-score: 22.4)
    Metabolism Energy metabolism Pentose phosphate pathway ribose 5-phosphate isomerase B (TIGR01120; EC 5.3.1.6; HMM-score: 21)
    Metabolism Energy metabolism Biosynthesis and degradation of polysaccharides galactose-6-phosphate isomerase, LacB subunit (TIGR01119; EC 5.3.1.26; HMM-score: 19.2)
    and 1 more
    ribose 5-phosphate isomerase (TIGR02133; EC 5.3.1.6; HMM-score: 17.5)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    no clan defined LacAB_rpiB; Ribose/Galactose Isomerase (PF02502; HMM-score: 94)
    DUF3666; Ribose-5-phosphate isomerase (PF12408; HMM-score: 84.1)
    and 1 more
    DUF2620; Protein of unknown function DUF2620 (PF10941; HMM-score: 13.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.012143
    • TAT(Tat/SPI): 0.000196
    • LIPO(Sec/SPII): 0.000893
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WP_000684781 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MKIALINENSQASKNHIIYDSLKEATDKKGYQLFNYGMRGEEGENPLTYVQNGLMAAILLNTKAVDFVVTGCGTGVGAMLALNSFPGVVCGLAVDPTDAYLYSQINGGNALSIPYAKGFGWGAELTLKLMFERLFAEEMGGGYPRERVIPEQRNARILNEVKQITYNDLMTILKTIDQDFLKDTISGKYFQEYFFENCQDDEVAAYLKEVLAK

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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