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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 03-AUG-2015
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae ST556
- locus tag: MYY_0405 [new locus tag: MYY_RS02090 ]
- pan locus tag?: PNEUPAN001115000
- symbol: MYY_0405
- pan gene symbol?: PTS-EII_4
- synonym:
- product: PTS N-acetylgalactosamine transporter subunit IIB
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: MYY_0405 [new locus tag: MYY_RS02090 ]
- symbol: MYY_0405
- product: PTS N-acetylgalactosamine transporter subunit IIB
- replicon: chromosome
- strand: +
- coordinates: 375212..375703
- length: 492
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: CP003357 (375212..375703) NCBI
- BioCyc: see MYY_RS02090
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0295 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
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481ATGACAACGCCAAATATTATTATGACCCGTATCGATGAACGGTTGATTCATGGGCAAGGA
CAACTTTGGGTAAAATACCTAGGTTGTAATACGGTCATTGTTGCCAATGACGAAGTAAGC
ACGGACAAGATGCAACAAACTCTGATGAAAACAGTTGTGCCAGACTCAGTTGCCATGCGT
TTCTTCCCTTTGCAAAAGGTGATTGATATCATTCACAAGGCTAATCCTGCTCAAACGATC
TTTATCGTTGTAAAGGATGTAAAGGACGCTTTAACCTTGGTAGAAGGTGGTGTCCCTATC
AAAGAAATCAATATTGGGAACATTCACAATGCCCCTGGTAAAGAGCAAGTGACACGCTCC
ATCTTCCTGGGTGAAGAGGACAAGGCAGCCCTCAAGGAATTAAGCCAAACTCATCAAGTA
ACATTTAATACGAAAACAACTCCAACAGGAAATGATGGAGCTGTTGAAGTCAACATTATG
GACTATATTTAA60
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492
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: MYY_0405 [new locus tag: MYY_RS02090 ]
- symbol: MYY_0405
- description: PTS N-acetylgalactosamine transporter subunit IIB
- length: 163
- theoretical pI: 6.10371
- theoretical MW: 18071.8
- GRAVY: -0.0840491
⊟Function[edit | edit source]
- TIGRFAM: Transport and binding proteins Carbohydrates, organic alcohols, and acids PTS system, mannose/fructose/sorbose family, IIB component (TIGR00854; EC 2.7.1.69; HMM-score: 148.9)Signal transduction PTS PTS system, mannose/fructose/sorbose family, IIB component (TIGR00854; EC 2.7.1.69; HMM-score: 148.9)
- TheSEED :
- PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)
- PFAM: no clan defined PTSIIB_sorb; PTS system sorbose subfamily IIB component (PF03830; HMM-score: 155.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 9.97
- Cytoplasmic Membrane Score: 0
- Cellwall Score: 0.01
- Extracellular Score: 0.02
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.010424
- TAT(Tat/SPI): 0.000568
- LIPO(Sec/SPII): 0.007911
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: AFC94067 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MTTPNIIMTRIDERLIHGQGQLWVKYLGCNTVIVANDEVSTDKMQQTLMKTVVPDSVAMRFFPLQKVIDIIHKANPAQTIFIVVKDVKDALTLVEGGVPIKEINIGNIHNAPGKEQVTRSIFLGEEDKAALKELSQTHQVTFNTKTTPTGNDGAVEVNIMDYI
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0295 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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