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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 02-APR-2025
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae ST556
- locus tag: MYY_RS08645 [old locus tag: MYY_1676 ]
- pan locus tag?: PNEUPAN003248000
- symbol: MYY_RS08645
- pan gene symbol?: rpsP_1
- synonym:
- product: DUF4649 family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: MYY_RS08645 [old locus tag: MYY_1676 ]
- symbol: MYY_RS08645
- product: DUF4649 family protein
- replicon: chromosome
- strand: +
- coordinates: 1655287..1655508
- length: 222
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: NC_017769 (1655287..1655508) NCBI
- BioCyc: MYY_RS08645 BioCyc
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_1566 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181ATGATTGAAATTACCTATTTAGATGCCAGCAAGAACGAAAGAACTGTGACTTTCGAGTCT
TATGAAGACTTTGAACGTTCGCAACAAGCTTGCCTTATCGGCGTCGCAGACTACTACCCT
GTCCAAAAATTAACTTACAAGGGTCATAATTTGGACTACCATGGGACTTATGGAGATATC
TTCTTCTATCTCATGAAACAAGATTTAAGCCAATATAACTAA60
120
180
222
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: MYY_RS08645 [old locus tag: MYY_1676 ]
- symbol: MYY_RS08645
- description: DUF4649 family protein
- length: 73
- theoretical pI: 4.44395
- theoretical MW: 8680.59
- GRAVY: -0.586301
⊟Function[edit | edit source]
- TIGRFAM: Protein fate Protein and peptide secretion and trafficking outer membrane exchange protein TraA, N-terminal region (TIGR04566; HMM-score: 12.4)
- TheSEED: see MYY_1676
- PFAM: no clan defined DUF4649; Domain of unknown function (DUF4649) (PF15507; HMM-score: 123.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 0.24
- Cytoplasmic Membrane Score: 0.05
- Cellwall Score: 0.8
- Extracellular Score: 8.91
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.6599
- Cytoplasmic Membrane Score: 0.0131
- Cell wall & surface Score: 0.0003
- Extracellular Score: 0.3267
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.012058
- TAT(Tat/SPI): 0.000351
- LIPO(Sec/SPII): 0.002494
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WP_000570257 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MIEITYLDASKNERTVTFESYEDFERSQQACLIGVADYYPVQKLTYKGHNLDYHGTYGDIFFYLMKQDLSQYN
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription[edit | edit source]
- transcription start site:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_1566 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]