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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 17-JUN-2018
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae NCTC7466
- locus tag: NCTC7466_00749 [new locus tag: DQM66_RS03900 ]
- pan locus tag?: PNEUPAN001798000
- symbol: NCTC7466_00749
- pan gene symbol?: —
- synonym:
- product: phosphopentomutase
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: NCTC7466_00749 [new locus tag: DQM66_RS03900 ]
- symbol: NCTC7466_00749
- product: phosphopentomutase
- replicon: chromosome
- strand: +
- coordinates: 740475..740885
- length: 411
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: LS483374 (740475..740885) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0725 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
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301
361ATGACGCGCTATGCTTTGCTGGTGAGAGGTATCAATGTTGGTGGTAAGAATAAGGTCGTC
ATGGCGGAACTTCGTCAAGAATTGACAAACTTGGGACTGGAAAAGGTTGAGAGCTACATC
AACAGTGGCAATATTTTCTTTACTTCGATAGATTCCAAAGCCCAATTGGTTGAAAAGCTA
GAGACTTTCTTTGCAGTCCATTATCCATTTATTCAGAGCTTTTCTTTACTGAGTCTAGAG
GACTTTGAGGCGGAACTTGAAAATCTACCAGCTTGGTGGAGCAGAGACTTGGCACGAAAA
GATTTTCTCTTTTACACTGAGGGTTTGGATGTGGACCAAGTCATCGCGACAGTTGAAAGT
TTAGAGCTGAAAGATGAAGTGCTTTATTTTGGAAAACTTGGGATTTTCTAG60
120
180
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411
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: NCTC7466_00749 [new locus tag: DQM66_RS03900 ]
- symbol: NCTC7466_00749
- description: phosphopentomutase
- length: 136
- theoretical pI: 4.35146
- theoretical MW: 15596.7
- GRAVY: 0.0823529
⊟Function[edit | edit source]
- reaction: EC 5.4.2.7? ExPASyPhosphopentomutase Alpha-D-ribose 1-phosphate = D-ribose 5-phosphate
- TIGRFAM:
- TheSEED: data available for Hungary19A-6, TIGR4
- PFAM: no clan defined DUF1697; Protein of unknown function (DUF1697) (PF08002; HMM-score: 105.4)and 2 moreHeH (CL0306) SAP; SAP domain (PF02037; HMM-score: 14.5)NADP_Rossmann (CL0063) Shikimate_DH; Shikimate / quinate 5-dehydrogenase (PF01488; HMM-score: 12)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.005609
- TAT(Tat/SPI): 0.000238
- LIPO(Sec/SPII): 0.000623
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: SQG01797 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MTRYALLVRGINVGGKNKVVMAELRQELTNLGLEKVESYINSGNIFFTSIDSKAQLVEKLETFFAVHYPFIQSFSLLSLEDFEAELENLPAWWSRDLARKDFLFYTEGLDVDQVIATVESLELKDEVLYFGKLGIF
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- data available for TIGR4
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0725 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.