From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 04-SEP-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae BM6001
  • locus tag: ODS73_00185 [new locus tag: ODS73_RS00185 ]
  • pan locus tag?: PNEUPAN000359000
  • symbol: ychF
  • pan gene symbol?: ychF
  • synonym:
  • product: redox-regulated ATPase YchF

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: ODS73_00185 [new locus tag: ODS73_RS00185 ]
  • symbol: ychF
  • product: redox-regulated ATPase YchF
  • replicon: chromosome
  • strand: +
  • coordinates: 21586..22701
  • length: 1116
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: CP107038 (21586..22701) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V: SPV_0004 PneumoBrowse

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGGCTTTGACAGCAGGTATCGTTGGTTTGCCAAACGTTGGTAAATCAACACTATTTAAT
    GCAATTACAAAAGCAGGAGCAGAGGCAGCAAACTACCCATTTGCGACTATTGATCCAAAT
    GTTGGAATGGTGGAAGTTCCAGATGAACGCCTACAAAAACTAACTGAAATGATAACTCCT
    AAAAAGACAGTTCCCACAACATTTGAATTTACGGATATTGCAGGGATTGTAAAAGGAGCT
    TCAAAAGGAGAAGGGCTAGGGAATAAATTCTTGGCCAATATTCGTGAAGTAGATGCGATT
    GTTCACGTAGTTCGTGCTTTTGATGATGAAAATGTGATGCGCGAGCAAGGACGTGAAGAC
    GCCTTTGTAGATCCACTTGCAGATATTGATACAATTAATCTGGAATTAATTCTTGCTGAC
    TTAGAATCAGTGAACAAACGATATGCGCGTGTAGAAAAGATGGCACGTACGCAAAAAGAT
    AAAGAATCAGTAGCAGAATTCAATGTTCTTCAAAAGATTAAACCAGTCCTAGAAGACGGG
    AAATCAGCTCGTACCATTGAATTTACAGATGAGGAACAAAAGGTTGTCAAAGGTCTTTTC
    CTTTTGACGACTAAACCAGTTCTTTATGTAGCTAATGTGGACGAGGATGTGGTTTCAGAA
    CCTGACTCTATCGACTATGTCAAACAAATTCGTGAATTTGCAGCGACAGAAAATGCTGAA
    GTAGTCGTTATTTCTGCGCGTGCTGAGGAAGAAATTTCTGAATTGGATGATGAAGATAAA
    AAAGAGTTTCTTGAAGCCATTGGTTTGACAGAATCAGGTGTAGATAAGTTGACGCGTGCA
    GCTTACCACTTGCTTGGATTGGGAACTTACTTCACAGCTGGTGAAAAAGAAGTTCGCGCT
    TGGACTTTCAAACGTGGTATGAAGGCTCCTCAAGCAGCTGGTATTATCCACTCAGACTTT
    GAAAAAGGCTTTATTCGTGCAGTAACCATGTCATATGAAGATCTAGTGAAATACGGATCT
    GAAAAGGCCGTAAAAGAAGCTGGACGCTTGCGTGAAGAAGGAAAAGAATATATCGTTCAA
    GATGGCGATATCATGGAATTCCGCTTTAATGTCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1116

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: ODS73_00185 [new locus tag: ODS73_RS00185 ]
  • symbol: YchF
  • description: redox-regulated ATPase YchF
  • length: 371
  • theoretical pI: 4.50887
  • theoretical MW: 41171.5
  • GRAVY: -0.259569

⊟Function[edit | edit source]

  • TIGRFAM:
    Unknown function General GTP-binding protein YchF (TIGR00092; HMM-score: 487.5)
    and 11 more
    Genetic information processing Protein synthesis Other Obg family GTPase CgtA (TIGR02729; HMM-score: 80.9)
    Unknown function General small GTP-binding protein domain (TIGR00231; HMM-score: 36.1)
    Unknown function General GTP-binding protein HflX (TIGR03156; HMM-score: 36)
    Genetic information processing Protein synthesis Other ribosome-associated GTPase EngA (TIGR03594; HMM-score: 33.9)
    Metabolism Transport and binding proteins Cations and iron carrying compounds ferrous iron transport protein B (TIGR00437; HMM-score: 32)
    Genetic information processing Protein synthesis Other ribosome biogenesis GTP-binding protein YlqF (TIGR03596; HMM-score: 24.3)
    Genetic information processing Protein synthesis Other GTP-binding protein Era (TIGR00436; HMM-score: 22.4)
    Genetic information processing Protein synthesis Other ribosome biogenesis GTPase YqeH (TIGR03597; HMM-score: 14.9)
    Genetic information processing Protein synthesis Other ribosome biogenesis GTP-binding protein YsxC (TIGR03598; HMM-score: 14.7)
    Genetic information processing Protein fate Protein modification and repair [FeFe] hydrogenase H-cluster maturation GTPase HydF (TIGR03918; HMM-score: 14.5)
    Genetic information processing Protein synthesis tRNA and rRNA base modification tRNA modification GTPase TrmE (TIGR00450; EC 3.6.-.-; HMM-score: 13.7)
  • TheSEED: data available for D39, Hungary19A-6, TIGR4
  • PFAM:
    Ubiquitin (CL0072) YchF-GTPase_C; Protein of unknown function (DUF933) (PF06071; HMM-score: 134)
    and 5 more
    P-loop_NTPase (CL0023) MMR_HSR1; 50S ribosome-binding GTPase (PF01926; HMM-score: 87.1)
    FeoB_N; Ferrous iron transport protein B (PF02421; HMM-score: 40.4)
    no clan defined MsyB; MsyB protein (PF13984; HMM-score: 15.5)
    P-loop_NTPase (CL0023) RsgA_GTPase; RsgA GTPase (PF03193; HMM-score: 12.8)
    no clan defined DUF6181; Family of unknown function (DUF6181) (PF19679; HMM-score: 12.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.9951
    • Cytoplasmic Membrane Score: 0.0004
    • Cell wall & surface Score: 0
    • Extracellular Score: 0.0045
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.164658
    • TAT(Tat/SPI): 0.031584
    • LIPO(Sec/SPII): 0.006308
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WIA45847 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MALTAGIVGLPNVGKSTLFNAITKAGAEAANYPFATIDPNVGMVEVPDERLQKLTEMITPKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGREDAFVDPLADIDTINLELILADLESVNKRYARVEKMARTQKDKESVAEFNVLQKIKPVLEDGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAATENAEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYIVQDGDIMEFRFNV

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Expression data[edit | edit source]

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

Retrieved from "http://pneumowiki.med.uni-greifswald.de/index.php?title=ODS73_00185&oldid=188630"