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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 04-SEP-2024
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae BM6001
- locus tag: ODS73_04965 [new locus tag: ODS73_RS04970 ]
- pan locus tag?: PNEUPAN001965000
- symbol: ybeY
- pan gene symbol?: ybeY
- synonym:
- product: rRNA maturation RNase YbeY
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: ODS73_04965 [new locus tag: ODS73_RS04970 ]
- symbol: ybeY
- product: rRNA maturation RNase YbeY
- replicon: chromosome
- strand: +
- coordinates: 955905..956402
- length: 498
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Location: CP107038 (955905..956402) NCBI
- BioCyc:
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0855 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481ATGTATATTGAAATGGTAGATGAAACTGGTCAAGTTTCAAAAGAAATGTTGCAACAAACC
CAAGAAATTTTGGAATTTGCAGCCCAAAAATTAGGAAAAGAAGACAAGGAGATGGCAGTC
ACTTTTGTGACCAATGAGCGTAGTCATGAACTTAATCTGGAGTACCGTGACACCGACCGT
CCGACAGATGTCATCAGCCTTGAGTATAAACCAGAATTGGAAATTGCCTTTGACGAAGAG
GATTTGCTTGAAAATCCAGAATTGGCAGAGATGATGTCTGAGTTTGATGCCTATATTGGG
GAATTGTTCATCTCTATCGATAAGGCTCATGAGCAGGCCGAAGAATATGGTCACAGCTTT
GAGCGTGAGATGGGCTTCTTGGCAGTACACGGCTTTTTACATATTAACGGCTATGATCAC
TACACTCCGGAAGAAGAAGCGGAGATGTTCGGTTTACAAGAAGAAATTTTGACAGCCTAT
GGACTCACAAGACAATAA60
120
180
240
300
360
420
480
498
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: ODS73_04965 [new locus tag: ODS73_RS04970 ]
- symbol: YbeY
- description: rRNA maturation RNase YbeY
- length: 165
- theoretical pI: 3.91397
- theoretical MW: 19245.2
- GRAVY: -0.578182
⊟Function[edit | edit source]
- TIGRFAM: Protein synthesis Other rRNA maturation RNase YbeY (TIGR00043; HMM-score: 130.7)
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM: Peptidase_MA (CL0126) YbeY; Endoribonuclease YbeY (PF02130; HMM-score: 137.3)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic
- Cytoplasmic Score: 7.5
- Cytoplasmic Membrane Score: 1.15
- Cellwall Score: 0.62
- Extracellular Score: 0.73
- Internal Helices: 0
- DeepLocPro: Cytoplasmic
- Cytoplasmic Score: 0.9999
- Cytoplasmic Membrane Score: 0
- Cell wall & surface Score: 0
- Extracellular Score: 0.0001
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.002972
- TAT(Tat/SPI): 0.000682
- LIPO(Sec/SPII): 0.000495
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq: WIA46691 NCBI
- UniProt:
⊟Protein sequence[edit | edit source]
- MYIEMVDETGQVSKEMLQQTQEILEFAAQKLGKEDKEMAVTFVTNERSHELNLEYRDTDRPTDVISLEYKPELEIAFDEEDLLENPELAEMMSEFDAYIGELFISIDKAHEQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEEEAEMFGLQEEILTAYGLTRQ
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0855 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You can add further information about the gene and protein here. [edit]