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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

NCBI: 04-SEP-2024

⊟Summary[edit | edit source]

  • organism: Streptococcus pneumoniae BM6001
  • locus tag: ODS73_08865 [new locus tag: ODS73_RS08875 ]
  • pan locus tag?: PNEUPAN003114000
  • symbol: ODS73_08865
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: ODS73_08865 [new locus tag: ODS73_RS08875 ]
  • symbol: ODS73_08865
  • product: hypothetical protein
  • replicon: chromosome
  • strand: +
  • coordinates: 1718894..1719394
  • length: 501
  • essential: unknown

⊟Accession numbers[edit | edit source]

  • Location: CP107038 (1718894..1719394) NCBI
  • BioCyc:
  • MicrobesOnline:
  • PneumoBrowse for strain D39V:

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    GTGGATAGAACTGACGAAGTCAGCTCAAAACACCGTTTTGAAGTGGCAGATAGAACTGAC
    GAAGTCAGCTCAAAACACCGTTTTGAAGTGGCAGATAGAACTGACGAAGTCAGCTCAAAA
    CACTGTTTTGAGGTTGTGGATAGAACTGACGAAGTCAGCTCAAAACACCGTTTTGAAGTG
    GCAGATAGAACTGACCAAGTCAGCTCAAAACACCGTTTTGAAGTGGCAGATAGAACTGAC
    GAAGTCAGCTCAAAACACCGTTTTGAGGTGGCAGATAGAACTGACGAAGTCAGCTCAAAA
    CACCGTTTTGAGGTGGCAGATAGAACTGACCAAGTCAGCTCAAAACACCGTTTTGAGGTG
    GCAGATAGAACTGACCAAGTCAGCTCAAAACACCGTTTTGAGGTGGCAGATAGAACTGAC
    CAAGTCAGCTCAAAACACCGTTTTGAGGTGGCAGATAGAACTGACCAAGTCAGTAACATA
    TATACGGCAAGGCGAAGCTAA
    60
    120
    180
    240
    300
    360
    420
    480
    501

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: ODS73_08865 [new locus tag: ODS73_RS08875 ]
  • symbol: ODS73_08865
  • description: hypothetical protein
  • length: 166
  • theoretical pI: 6.35177
  • theoretical MW: 19462.8
  • GRAVY: -1.22892

⊟Function[edit | edit source]

  • TIGRFAM:
    Unknown function General ROK family protein (putative glucokinase) (TIGR00744; HMM-score: 14.1)
    EXLDI protein (TIGR04342; HMM-score: 12.6)
  • TheSEED:
  • PFAM:
    no clan defined Nup54; Nucleoporin complex subunit 54 (PF13874; HMM-score: 22)
    DUF5463; Family of unknown function (DUF5463) (PF17551; HMM-score: 21.5)
    Nucleot_cyclase (CL0276) Guanylate_cyc; Adenylate and Guanylate cyclase catalytic domain (PF00211; HMM-score: 17.7)
    and 6 more
    no clan defined DUF1413; Domain of unknown function (DUF1413) (PF07205; HMM-score: 14.2)
    Phage_1_1; Bacteriophage 1.1 Protein (PF08200; HMM-score: 14)
    E-set (CL0159) PKD_2; PKD-like family (PF16407; HMM-score: 14)
    no clan defined Orthopox_F6; Orthopoxvirus F6 protein (PF06601; HMM-score: 13.3)
    DUF4961; Domain of unknown function (DUF4961) (PF16328; HMM-score: 10.9)
    CMV_1a_C; Cucumber mosaic virus 1a protein C terminal (PF12503; HMM-score: 9.2)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • DeepLocPro: Cytoplasmic
    • Cytoplasmic Score: 0.742
    • Cytoplasmic Membrane Score: 0.0002
    • Cell wall & surface Score: 0.0004
    • Extracellular Score: 0.2574
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.008962
    • TAT(Tat/SPI): 0.001319
    • LIPO(Sec/SPII): 0.00222
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

  • GI:
  • RefSeq: WIA45288 NCBI
  • UniProt:

⊟Protein sequence[edit | edit source]

  • MDRTDEVSSKHRFEVADRTDEVSSKHRFEVADRTDEVSSKHCFEVVDRTDEVSSKHRFEVADRTDQVSSKHRFEVADRTDEVSSKHRFEVADRTDEVSSKHRFEVADRTDQVSSKHRFEVADRTDQVSSKHRFEVADRTDQVSSKHRFEVADRTDQVSNIYTARRS

⊟Experimental data[edit | edit source]

  • protein localization:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription[edit | edit source]

  • transcription start site:

⊟Expression data[edit | edit source]

  • PneumoExpress for strain D39V:

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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