PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN000036000
• symbol^?: —
• synonym:
• description^?: tyrosine-type recombinase/integrase

  descriptions from strain specific annotations:

  • tyrosine-type recombinase/integrase
  • prophage Sa05, site-specific recombinase, phage integrase family
  • site-specific integrase
  • integrase
  • integrase/recombinase, phage integrase family
  • prophage Sa05, site-specific recombinase phage integrase
  • tyrosine-type DNA integrase
  • pseudogene
• strand^?: -
• coordinates^?: 21542..22708
• occurrence^?: in 35% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS05595
(2)
D39:
—
(2)
D39V:
—
(19A)
Hungary19A-6:
SPH_RS01390
(19F)
EF3030:
—
(6B)^?
670-6B:
—
(6A)
6A-10:
—
(5)
70585:
—
(19F)
A026:
T308_RS00855
(3)
A66:
—
(11A)
AP200:
—
(12F)
ASP0581:
EL334_RS00440
(19F)
ATCC 49619:
—
(23F)
ATCC 700669:
—
(19F)
BM6001:
ODS73_RS01300
(1)
BVJ1JL:
—
(14)
CGSP14:
—
(19F)
G54:
—
(1)
gamPNI0373:
—
(3)
HU-OH:
—
(19A)
Hu15:
SPNHU15_RS01180
(19A)
Hu17:
SPNHU17_RS01110
(1)
INV104:
INV104_RS05670
(14)
INV200:
—
(14)
JJA:
—
(19F)
MDRSPN001:
MDRSPN_RS00865
(1)
NCTC7465:
—
(2)
NCTC7466:
—
(4)
NU83127:
—
(3)
OXC141:
—
(1)
P1031:
—
(2)
R6:
—
(19A)
SP49:
BMJ42_RS01540
(1)
SPN032672:
SPN032672_RS00540
(3)
SPN034156:
—
(3)
SPN034183:
—
(3)
SPN994038:
—
(3)
SPN994039:
—
(3)
SPNA45:
—
(19F)
ST556:
MYY_RS01335
(19F)
Taiwan19F-14:
SPT_RS01125
(19A)
TCH8431/19A:
HMPREF0837_RS02390
(4)
Xen35:
CXP32_RS05630

⊟Genome Viewer

TIGR4
Hungary19A-6

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MNIKEKIKKNGQRVYYASVYLGVDQLTGKKARTTVTATTKKGVKVKARDAINTFAANGYT
  Hungary19A-6    MKITEVIKKDGSKVYRANVYLGVDQVTGKKVKTKVTGRTQKEVKQKANQEKIAFQKAGST
                  *:*.* ***:*.:** *.*******:****.:*.**. *:* ** **.:   :*   * *
  
  TIGR4           VKDKPTITTYNELVKVWWDSYKNTVKPNTRQSMEGLVRVHLLPVFGDYKLSKLTTPILQQ
  Hungary19A-6    RQKAVTIKNYQELATLWLESYKNTVKPNTQGNVKKLIDNHILPIFGAYKLDKLTTPLIQS
                   :.  **..*:**..:* :**********: .:: *:  *:**:** ***.*****::*.
  
  TIGR4           QVNKWADKANKGEKGAFANYSLLHNMNKRILKYGVAIQVIQYNPANDVIVPRKQQKEK-A
  Hungary19A-6    IINELADKTNRGEKAAFLHYDKIHALNKRILQYGVTMQAIPSNPARDVVLPRNTQKAKRK
                   :*: ***:*:***.** :*. :* :*****:***::*.*  ***.**::**: ** *  
  
  TIGR4           AVKYLDNKELKQFLDYLDALDQSNYENLFDVVLYKTLLATGCRISEALALEWSDIDLESG
  Hungary19A-6    KVKHFENQELKKFLGYLDNLDTHRYRYYYETTLYKFLLATGCRINEALALSWSDIDLDNA
                   **:::*:***:**.*** **  .*.  ::..*** ********.*****.******:..
  
  TIGR4           VISINKTLNRYQEINSPKSSAGYRDIPIDKATLLLLKQYKNRQQIQSWKLGRSETVVFSV
  Hungary19A-6    VVHITKTLNRDIEINSPKSKASYRDIDIDQATVSMLKQYKLRQTKEAWKIGQRERVVFSD
                  *: *.*****  *******.*.**** **:**: :***** **  ::**:*: * **** 
  
  TIGR4           FTEKYAYACNLRKRLNKHFDAAGVTNVSFHGFRHTHTTMMLYAQVSPKDVQYRLGHSNLM
  Hungary19A-6    FIHEYPSSSRLKRRLQTHFKRADVPNIGFHGFRHTHASLLLNSGIPYKELQYRLGHSTLS
                  * .:*. :..*::**:.**. *.*.*:.********::::* : :. *::*******.* 
  
  TIGR4           ITENTYWHTNQENAKKAVSNYETAINNL
  Hungary19A-6    MTMDIYSHLSKENAKKAVSFYETALKAL
                  :* : * * .:******** ****:: *