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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN000085000
- symbol?: hsdS-F
- synonym:
- description?: restriction endonuclease subunit S
- restriction endonuclease subunit S
- putative type I restriction-modification system, S subunit
- putative type I restriction-modification system S protein
- Restriction endonuclease S subunit
- type I restriction enzyme
- Type I restriction modification DNA specificity domain protein
- type I restriction-modification system, S subunit, putative
- Type-1 restriction enzyme EcoKI specificity
- Type I restriction enzyme EcoKI specificity protein (S protein)
- type I restriction-modification protein subunit S
- Type I restriction-modification system, specificity subunit S type F
- type I restriction-modification system M protein
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 59524..55162
- occurrence?: in 58% of 43 strains
⊟Orthologs[edit | edit source]
(3)
SPNA45:
—
(19F)
ST556:
—
(19F)
Taiwan19F-14:
—
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 M-----------------------------------------------------------
D39 ------------------------------------------------------------
D39V MTPEQLKASILQRAMEGKLVPQNPNDEPASELLKRIKAEKEKLISEGKIKRDKKETEIFR
Hungary19A-6 M-----------------------------------------------------------
TIGR4 ------------------------------VKLTTCYF----------------------
D39 ------------------------------------------------------------
D39V GDDGKHYGKFADGSTQEIDVPYDIPDTWEWVRIKSIYWNFGQNKPEKSFRYIDTSSIDRK
Hungary19A-6 ------------------------------VKLTTCYF----------------------
TIGR4 ------------------------------------------------------------
D39 ------------------------------------------------------------
D39V KNIINYKNLQYLSPEQAPSRARKLVSQNSVLFSTVRPYLKNIAVVRELKEYLIASTAFIV
Hungary19A-6 ------------------------------------------------------------
TIGR4 ------------------------------------------------------------
D39 ------------------------------------------------------------
D39V LDTLLNETYLKYYLLSDNFINRVNNKSTGTSYPAINDYNFNLLLIALPPLSEQQRIVEAI
Hungary19A-6 ------------------------------------------------------------
TIGR4 ------------------------------------------------------------
D39 ------------------------------------------------------------
D39V ESALEKVDEYAESYNRLEQLDKEFPDKLKKSILQYAMQGKLVEQDPNDESVEVLLEKIRA
Hungary19A-6 ------------------------------------------------------------
TIGR4 -----------------------CDYGSYYGNIPMNWVVIKIKDIFSINTGLSYKKGDLS
D39 ----------------------------------MNWVVIKIKDIFSMNTGLSYKKGDLS
D39V EKQKLFEEGKIKKKDLDISIVSQGDDNSYYGNIPMNWVVIKIKDIFSMNTGLSYKKGDLS
Hungary19A-6 -----------------------CDYGSYYGNIPMNWGVIKIKDIFSINTGLSYKKGDLS
*** *********:************
TIGR4 INNKGVRIIRGGNIKPLEFSLLDNDYYIDTQFISSEQVYLKHNQLITPVSTSLEHIGKFA
D39 INNKGVRIIRGGNIKPLEFSLLDNDYYIDTQFISSEQVYLKHNQLITPVATSLEHIGKFA
D39V INNKGVRIIRGGNIKPLEFSLLDNDYYIDTQFISSEQVYLKHNQLITPVATSLEHIGKFA
Hungary19A-6 INNKGVRIIRGGNIKPLEFSLLDNDYYIDTQFISSEQVYLKHNQLITPVSTSLEHIGKFA
*************************************************:**********
TIGR4 RIDKDYDGVVAGGFIFQLTPFESSEIISKFLLFNLSSPLFYKQLKAITKLSGQALYNIPK
D39 RIDKDYDGVVAGGFIFQLTPFESSEIISKFLLFNLSSPLFYKQLKAITKLSGQALYNIPK
D39V RIDKDYDGVVAGGFIFQLTPFESSEIISKFLLFNLSSPLFYKQLKAITKLSGQALYNIPK
Hungary19A-6 RIDKDYDGVVAGGFIFQLTPFESSEIISKFLLFNLSSPLFYKQLKAITKLSGQALYNIPK
************************************************************
TIGR4 TTLSELLIPLAPFEEQELITQKVEKLFEKVNQL--
D39 TTLSELLIPLAPFEEQELITQKVEKLFEKVNQL--
D39V TTLSELLIPLAPFEEQELITQKVEKLFEKVNQL--
Hungary19A-6 TTLSELLIPLAPFEEQELITQKVEKLFEKVNQLWK
*********************************