PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN000086000
• symbol^?: hsdS_1
• synonym:
• description^?: restriction endonuclease subunit S

  descriptions from strain specific annotations:

  • restriction endonuclease subunit S
  • putative type I restriction-modification system S protein
  • type I restriction-modification system S protein
  • putative type I restriction-modification system, S subunit
  • type I restriction enzyme
  • Type-1 restriction enzyme EcoKI specificity
  • type I restriction endonuclease subunit S
  • type I restriction modification DNA specificity domain protein
  • type I restriction-modification system, S subunit
  • type I restriction-modification system, S subunit, putative
  • pseudogene
• strand^?: +
• coordinates^?: 60994..146287
• occurrence^?: in 42% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS02480
(2)
D39:
SPD_RS02425
(2)
D39V:
—
(19A)
Hungary19A-6:
—
(19F)
EF3030:
—
(6B)^?
670-6B:
—
(6A)
6A-10:
HKM25_RS02470
(5)
70585:
—
(19F)
A026:
—
(3)
A66:
—
(11A)
AP200:
—
(12F)
ASP0581:
EL334_RS02620
(19F)
ATCC 49619:
EL263_RS02600
(23F)
ATCC 700669:
SPN23F_RS02360
(19F)
BM6001:
—
(1)
BVJ1JL:
JN057_RS02590
(14)
CGSP14:
SPCG_RS02525
(19F)
G54:
—
(1)
gamPNI0373:
HMPREF1038_RS02645
(3)
HU-OH:
—
(19A)
Hu15:
—
(19A)
Hu17:
—
(1)
INV104:
—
(14)
INV200:
—
(14)
JJA:
—
(19F)
MDRSPN001:
MDRSPN_RS02340
(1)
NCTC7465:
AT689_RS00040
(2)
NCTC7466:
DQM66_RS02425
(4)
NU83127:
—
(3)
OXC141:
—
(1)
P1031:
—
(2)
R6:
SPR_RS02285
(19A)
SP49:
BMJ42_RS03065
(1)
SPN032672:
—
(3)
SPN034156:
SPN034156_RS08480
(3)
SPN034183:
SPN034183_RS02550
(3)
SPN994038:
—
(3)
SPN994039:
SPN994039_RS02470
(3)
SPNA45:
—
(19F)
ST556:
—
(19F)
Taiwan19F-14:
—
(19A)
TCH8431/19A:
—
(4)
Xen35:
CXP32_RS02535

⊟Genome Viewer

TIGR4
D39

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MRIKSIYWNFGQNKPEKSFRYIDTSSIDRKKNIINYKNLQYLSPEQAPSRARKLVSQNSV
  D39             MRIKSIYWNFGQNKPEKSFRYIDTSSIDRKKNIINYKNLQYLSPEQAPSRARKLVSQNSV
                  ************************************************************
  
  TIGR4           LFSTVRPYLKNIAVVRELKEYLIASTAFIVLDTLLNETYLKYYLLSDNFINRVNNKSTGT
  D39             LFSTVRPYLKNIAVVRELKEYLIASTAFIVLDTLLNETYLKYYLLSDNFINRVNNKSTGT
                  ************************************************************
  
  TIGR4           SYPAINDYNFNLLLIALPPLSEQQRIVEAIESALEKVDEYAESYNRLEQLDKEFPDKLKK
  D39             SYPAINDYNFNLLLIALPPLSEQQRIVEAIESALEKVDEYAESYNRLEQLDKEFPDKLKK
                  ************************************************************
  
  TIGR4           SILQYAMQGKLVEQDPNDESVEVLLEKIRAEKQKLFEEGKIKKKDLDISIVSQGDDNSYY
  D39             SILQYAMQGKLVEQDPNDESVEVLLEKIRAEKQKLFEEGKIKKKDLDISIVSQGDDNSYY
                  ************************************************************
  
  TIGR4           ---EEVPC----EIPESWEWVRLNDITSYIQRGKSPKYSNIPIY----PVIAQKCNQWSG
  D39             GNKDETTSYPIYEIPEAWRYIKFASLVNF-RIGKTPPRSEATFWGTEIPWVSISDMPISG
                     :*...    ****:*.:::: .:..: : **:*  *: .::    * :: .    **
  
  TIGR4           FSIDLARFIDPETVHSYQKERLLRDGDLMWNSTGLGTLGRLAIYHENKNPYGWAVADSHV
  D39             YVTNTRESISKLALKSKKIDISPKGTLLMSFKLSIGKVAILDIP---------ATHNEAI
                  :  :  . *.  :::* : :   :.  **  . .:*.:. * *          *. :. :
  
  TIGR4           TVIRVLSGVINCHFIYNFLSSPIVQSVIEEKASGSTKQKELLTKTIKEYLIPLPPLPEQS
  D39             ISIFPYANKENIIRDYLMIFLPLISTLGDSK--DAIKGKTLNSTSISELLIPISNHEEMK
                    *   :.  *    * ::  *::.:: :.*  .: * * * :.:*.* ***:.   * .
  
  TIGR4           RIVDKIEQFFAHIDALI-
  D39             RIIFKVDLLFQKVSQLFE
                  **: *:: :* ::. *: