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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN000099000
- symbol?: cpsI
- synonym:
- description?: O-antigen polymerase
- O-antigen polymerase
- polysaccharide polymerase Cps19aI
- polysaccharide polymerase
- oligosaccharide repeat unit polymerase
- oligosaccharide repeat unit polymerase Wzy
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 80235..81572
- occurrence?: in 30% of 43 strains
⊟Orthologs[edit | edit source]
(4)?
TIGR4:
—
(2)
D39:
—
(2)
D39V:
—
(6B)?
670-6B:
—
(6A)
6A-10:
—
(5)
70585:
—
(1)
NCTC7465:
—
(2)
NCTC7466:
—
(4)
NU83127:
—
(3)
OXC141:
—
(1)
P1031:
—
(2)
R6:
—
(3)
SPN034183:
—
(3)
SPN994038:
—
(3)
SPN994039:
—
⊟Genome Viewer[edit | edit source]
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
Hungary19A-6 MTYLFLLCLTLFLLTFFYFFAFNQDLIAPPVVMSVMFLISSVFALINVQNWNIEYSGLAY
EF3030 MSYLFLLCLTLFLLTIFYFFAFIQDLIAPPVVMSVMFLISSVFALVNSKNWNIEYSGIAY
*:*************:****** **********************:* :********:**
Hungary19A-6 LLIISGIIVFSMPLLALNSPSLNTKIKVTDRLIDIQFWKIALTIIVDLIILYLYRREIHN
EF3030 ILIISGIIIFSIPLMALKSPNFNTEVKIADRLIDIQFWKIALTIIIDLFILYLYRKEIYN
:*******:**:**:**:**.:**::*::****************:**:******:**:*
Hungary19A-6 LALSHGYTGSNFQWFFRNATSYEGELTVRTSIRVLIRIIDVSAYIFGYTFINNFFIYSHK
EF3030 LVLSNGYTGSNIQWFFRNATSYEGELTVRTFIRVLIRVIDVSAYIFGYTFINNFLIYRHK
*.**:******:****************** ******:****************:** **
Hungary19A-6 RSKDLLLLVPFLIFISKTLLSGGRLDIIKILIAYVVMAYIQQKRKVGWDKVISHKYMRLG
EF3030 RPKDILLLVPLLIFISKTLISGGRQDIIKILIAYVIMMYIQQKRKVGWNRVISHKYIHLG
*.**:*****:********:**** **********:* **********::******::**
Hungary19A-6 FVGLIAGIPTFYYSLFLSGRSTTRTVFESISTYLGGSIQHFNQYIQNPIGVAEVFGDESF
EF3030 FVGLIAGIPAFYYSLFLAGRSTTRTLFESVSTYLGGSIQHFNQYIENPLDPGEVFGSETL
*********:*******:*******:***:***************:**:. .****.*::
Hungary19A-6 VAIMNILGNLGFVNYNSTVHLEFRQLGITMGNVYTFFRRPWHDFGLVGMYIFSFVVGVFF
EF3030 VPILNILGEMGLVNYRSTIHLEFRTLGVTVGNVYTFFRRPLHDFGLVGMYVFVFAVGAFF
*.*:****::*:***.**:***** **:*:********** *********:* *.**.**
Hungary19A-6 AIFYLKLRKSRAGFKLDIHTIIYSYFFYWIFLSSIEQYSFTTISLFTLVFIVLVYLMAFF
EF3030 AIYYLVLRKKQVGFNLDIHTIIYSYVFYWIFLSSIEQYSFTMISLYTLVFIVLVYFMAIF
**:** ***.:.**:**********.*************** ***:*********:**:*
Hungary19A-6 YWNLDFHRGKLVIKLSDTSIK-SEN
EF3030 YWCTDFKRGKLIFKISDSSIKLKEE
** **:****::*:**:*** .*: