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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN000163000
- symbol?: psrA
- synonym:
- description?: tyrosine-type DNA invertase PsrA
- tyrosine-type DNA invertase PsrA
- integrase/recombinase, phage integrase family
- Integrase
- Integrase/recombinase
- integrase/recombinase%2C phage integrase family
- integrase/recombinase, phage integrase family protein
- Integrase/recombinase CreX (XerC/CodV family)
- phage integrase family recombinase
- putative phage integrase/recombinase
- site-specific recombinase, phage integrase family
- Tyrosine recombinase XerC
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 146344..147141
- occurrence?: in 35% of 43 strains
⊟Orthologs[edit | edit source]
(6B)?
670-6B:
—
(6A)
6A-10:
—
(5)
70585:
—
(19A)
Hu15:
—
(19A)
Hu17:
—
(1)
INV104:
—
(3)
SPN034183:
—
(3)
SPN994038:
—
(3)
SPN994039:
—
⊟Genome Viewer[edit | edit source]
| D39 | |
| D39V | |
| Hungary19A-6 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
D39 MKDFELHLKKAGLAENTVRSYLYGVRFFLENYKLKMEDLFEYKGYLLDNFKPKTVNLRLQ
D39V MKDFELHLKKAGLAENTVRSYLYGVRFFLENYKLKMEDLFEYKGYLLDNFKPKTVNLRLQ
Hungary19A-6 MKDFELHLKKAGLAENTVRSYLYGVRFFLENYELKMEDLFEYKGYLLDNFKPKTVNLRLQ
********************************:***************************
D39 GVNKYLAFIGHDDLKLKFVKVQQKPFLEDVISHADYLFLKRSLKKDGILKWHFVVWFLGA
D39V GVNKYLAFIGHDDLKLKFVKVQQKPFLEDVISHADYLFLKRSLKKDGILKWHFVVWFLGA
Hungary19A-6 GVNKYLAFIGHDDLKLKFVKVQQKPFLEDVISHADYLFLKRSLKKDGILKWHFVVWFLGA
************************************************************
D39 TGARVSELIKLKVEHVEIGYFDIYSKGGKIRRLYIPKKLRNSCLSWLESENRRSGYLFLN
D39V TGARVSELIKLKVEHVEIGYFDIYSKGGKIRRLYIPKKLRNSCLSWLESENRRSGYLFLN
Hungary19A-6 TGARVSELIKLKVEHVEIGYFDIYSKGGKIRRLYIPKKLRNSCLSWLESENRRSGYLFLN
************************************************************
D39 KFNEPITARGVAQQLKNYADKYKMNPKVIYPHSFRHLFAKNFLAKYNDIALLADLMGHES
D39V KFNEPITARGVAQQLKNYADKYKMNPKVIYPHSFRHLFAKNFLAKYNDIALLADLMGHES
Hungary19A-6 KFNEPITARGVAQQLKNYADKYKMNPKVIYPHSFRHLFAKNFLAKYNDIALLADLMGHES
************************************************************
D39 IETTRIYLRKTATEQQNIVDKIVNW
D39V IETTRIYLRKTATEQQNIVDKIVNW
Hungary19A-6 IETTRIYLRKTATEQQNIVDKIVNW
*************************