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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN000298000
- symbol?: —
- synonym:
- description?: ISL3 family transposase
- ISL3 family transposase
- transposase
- IS1167, transposase
- putative IS1167 transposase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 294593..32259
- occurrence?: in 24% of 41 strains
⊟Orthologs[edit | edit source]
670-6B:
—
6A-10:
—
70585:
—
A026:
—
A66:
—
AP200:
—
BVJ1JL:
—
CGSP14:
—
G54:
—
gamPNI0373:
—
HU-OH:
—
Hu15:
—
Hu17:
—
INV104:
—
INV200:
—
SPN034156:
—
SPN034183:
—
SPN994038:
—
SPN994039:
—
SPNA45:
—
ST556:
—
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MEQLHFITKLLDIKDPNIQILDIINKDTHKEIIAKLDYDAPSCPECGNQLKKYDFQKPSK
D39 MEQLHFITKLLDIKDPNIQILDIINKDTHKEIIAKLDYDAPSCPECGSQMKKYDFQKPSK
Hungary19A-6 MEQLHFITKLLDIKDTNIQIIDVVNRDSHKEIIAKLDYDAPSCPECGNQLKKYDFQKPSK
EF3030 MEQLHFITKLLDIKDTNIQIIDVVNRDSHKEIIAKLDYDAPSCPECGNQLKKYDFQKPSK
***************.****:*::*:*:*******************.*:**********
TIGR4 IPYLETTGMPTRILLRKRRFKCYHCSKMMVAETSIVKKNHQIPRIINQKIAQKLIEKISM
D39 IPYLETTGMPTRILLRKRRFKCYHCSKMMVAETSIVKKNHQIPRIINQKIAQKLIEKISM
Hungary19A-6 IPYLETTGMPTRILLRKRRFKCYHCSKMMVAETSIVKKNHQIPRIINQKIAQKLIEKISM
EF3030 IPYLETTGMPTRILLRKRRFKCYHCSKMMVAETSIVKKNHQIPRIINQKIAQKLIEKISM
************************************************************
TIGR4 TDIAHQLSISTSTVIRKLNDFHFKHDFSCLPEIMSWDEYAFTKGKMSFIAQDFNNLNIIT
D39 TDIAHQLSISTSTVIRKLNDFHFKHDFSCLPEIMSWDEYAFTKGKMSFIAQDFNNLNIIT
Hungary19A-6 TDIAHQLSISTSTVIRKLNDFHFKHDFSCLPEIMSWDEYAFTKGKMSFIAQDFNNLNIIT
EF3030 TDIAHQLSISTSTVIRKLNDFHFKHDFSCLPEIMSWDEYAFTKGKMSFIAQDFNNLNIIT
************************************************************
TIGR4 VLEGRTQAIIRNHFLKYDRAVRCRVKIITMDMFSPYYDLARQLFPCAKIVLDRFHIVQHL
D39 VLEGRTQAVIRDHFLKYDRAVRCRVKIITMDMFSPYYGLAKQL---------RFHIVQHL
Hungary19A-6 VLEGRTQAIIRNHFLKYDRAVRCRVKIITMDMFSPYYDLARQLFPCAKIVLDRFHIVQHL
EF3030 VLEGRTQAIIRNHFLKYDRAVRCRVKIITMDMFSPYYDLARQLFPCAKIVLDRFHIVQHL
********:**:*************************.**:** ********
TIGR4 SRAMSRVRVQIMNQLDRKSHEYKAIKRYWKLIQQDSRKLSDKHFYRPTFRMHLTNKEILN
D39 SRAMSRVRVQIMNQFHRKSHEYKAIKRYWKLIQQDSRKLSDKQFYRPTFRMHLTNKEILN
Hungary19A-6 SRAMSRVRVQIMNQLDRKSHEYKAIKRYWKLIQQDSRKLSDKHFYRPTFRMHLTNKEILN
EF3030 SRAMSRVRVQIMNQLDRKSHEYKAIKRYWKLIQQDSRKLSDKHFYRPTFRMHLTNKEILN
**************:.**************************:*****************
TIGR4 KLLSYSQDLKHHYQLYQLLLFHFQNKEPEKFFGLIEDNLKQVHPLFQTVFKTFLKDKEKI
D39 KLLSYSEDLKHHYQLYQLLLFHFQNKEPEKFFGLIEDNLKQVHPIFQTVFKTFLKDKEKI
Hungary19A-6 KLLSYSQDLKHHYQLYQLLLFHFQNKEPEKFFGLIEDNLKQVHPLFQTVFKTFLKDKEKI
EF3030 KLLSYSQDLKHHYQLYQLLLFHFQNKEPEKFFGLIEDNLKQVHPLFQTVFKTFLKDKEKI
******:*************************************:***************
TIGR4 VNALQLHYSNAKLEATNNLIKLIKRNAFGFRNFENFKKRIFIALNIKKERTKFVLSRA
D39 VNALQLHYSNAKPEATNNLIKLIKRNAFGFRNFENFKKRIFIALNIKKERTKFVLSRA
Hungary19A-6 VNALQLHYSNAKLEATNNLIKLIKRNAFGFRNFENFKKRIFIALNIKKERTKFVLSQA
EF3030 VNALQLHYSNAKLEATNNLIKLIKRNAFGFRNFENFKKRIFIALNIKKERTKFVLSRA
************ *******************************************:*