PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN000361000
• symbol^?: mfd
• synonym:
• description^?: transcription-repair coupling factor

  descriptions from strain specific annotations:

  • transcription-repair coupling factor
  • putative putative transcription-repair coupling factor
  • Transcription-repair coupling factor (superfamily II helicase)
• strand^?: +
• coordinates^?: 361715..365230
• occurrence^?: in 100% of 43 strains

⊟Orthologs

TIGR4:
SP_RS00030 (mfd)
D39:
SPD_RS00030 (mfd)
D39V:
SPV_RS00030 (mfd)
Hungary19A-6:
SPH_RS00030 (mfd)
EF3030:
EF3030_RS00030 (mfd)
670-6B:
SP670_RS00125 (mfd)
6A-10:
HKM25_RS00120 (mfd)
70585:
SP70585_RS00060 (mfd)
A026:
T308_RS11000 (mfd)
A66:
A66_RS00065 (mfd)
AP200:
SPAP_RS00030 (mfd)
ASP0581:
EL334_RS00030 (mfd)
ATCC 49619:
EL263_RS00030 (mfd)
ATCC 700669:
SPN23F_RS00030 (mfd)
BM6001:
ODS73_RS00195 (mfd)
BVJ1JL:
JN057_RS00030 (mfd)
CGSP14:
SPCG_RS00030 (mfd)
G54:
SPG_RS00030 (mfd)
gamPNI0373:
HMPREF1038_RS00035 (mfd)
HU-OH:
EL271_RS00030 (mfd)
Hu15:
SPNHU15_RS00030 (mfd)
Hu17:
SPNHU17_RS00030 (mfd)
INV104:
INV104_RS00030 (mfd)
INV200:
SPNINV200_RS00030 (mfd)
JJA:
SPJ_RS00030 (mfd)
MDRSPN001:
MDRSPN_RS00030 (mfd)
NCTC7465:
AT689_RS02640 (mfd)
NCTC7466:
DQM66_RS00030 (mfd)
NU83127:
EL277_RS00030 (mfd)
OXC141:
SPNOXC_RS00030 (mfd)
P1031:
SPP_RS00030 (mfd)
R6:
SPR_RS00030 (mfd)
SP49:
BMJ42_RS00030 (mfd)
SPN032672:
SPN032672_RS04445 (mfd)
SPN034156:
SPN034156_RS06005 (mfd)
SPN034183:
SPN034183_RS00030 (mfd)
SPN994038:
SPN994038_RS00030 (mfd)
SPN994039:
SPN994039_RS00030 (mfd)
SPNA45:
SPNA45_RS00030 (mfd)
ST556:
MYY_RS00175 (mfd)
Taiwan19F-14:
SPT_RS00210 (mfd)
TCH8431/19A:
HMPREF0837_RS01480 (mfd)
Xen35:
CXP32_RS00030 (mfd)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MVTLLDLFSENDQIKKWHQNLTDKKRQLILGLSTSTKALAIASSLEKEDRIVLLTSTYGE
  D39             MVTLLDLFSENDQIKKWHQNLTDKKRQLILGLSTSTKALAIASSLEKEDRIVLLTSTYGE
  D39V            MVTLLDLFSENDQIKKWHQNLTDKKRQLILGLSTSTKALAIASSLEKEDRIVLLTSTYGE
  Hungary19A-6    MVTLLDLFSENDQIKKWHQNLTDKKRQLILGLSTSTKALAIASSLEKEDRIVLLTSTYGE
  EF3030          MVTLLDLFSENDQIKKWHQSLTDKKRQLILGLSTSTKALAIASSLEKEDRIVLLTSTYGE
                  *******************.****************************************
  
  TIGR4           AEGLVSDLISILGEELVYPFLVDDAPMVEFLMSSQEKIISRVEALRFLTDSSKKGILVCN
  D39             AEGLVSDLISILGEELVYPFLVDDAPMVEFLMSSQEKIISRVEALRFLTDSSKKGILVCN
  D39V            AEGLVSDLISILGEELVYPFLVDDAPMVEFLMSSQEKIISRVEALRFLTDSSKKGILVCN
  Hungary19A-6    AEGLVSDLISILGEELVYPFLVDDAPMVEFLMSSQEKIISRVEALRFLTDSSKKGILVCN
  EF3030          AEGLVSDLISILGEELVYPFLVDDAPMVEFLMSSQEKIISRVEALRFLTDSSKKGILVCN
                  ************************************************************
  
  TIGR4           IAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDIL
  D39             IAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDIL
  D39V            IAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDIL
  Hungary19A-6    IAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDIL
  EF3030          IAASRLILPSPNAFKDSIVKISVGEEYDQHAFIHQLKENGYRKVTQVQTQGEFSLRGDIL
                  ************************************************************
  
  TIGR4           DIFEISQLEPCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQS
  D39             DIFEISQLEPCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQS
  D39V            DIFEISQLEPCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQS
  Hungary19A-6    DIFEISQLEPCRIEFFGDEIDGIRSFEVETQLSKENKTELTIFPASDMLLREKDYQRGQS
  EF3030          DIFEMSQLEPCRIEFFGDEIDGIRSFEVETQLSKENKIELTIFPASDMLLREKDYQRGQS
                  ****:******************************** **********************
  
  TIGR4           ALEKQISKTLSPILKSYLEEILSSFHQKQSHADSRKFLSLCYDKTWTVFDYIEKDTPIFF
  D39             ALEKQISKTLSPILKSYLEEILSSFHQKQSHADSRKFLSLCYDKTWTVFDYIEKDTPIFF
  D39V            ALEKQISKTLSPILKSYLEEILSSFHQKQSHADSRKFLSLCYDKTWTVFDYIEKDTPIFF
  Hungary19A-6    ALEKQISKTLSPILKSYLEEILSSFHQKQSHADSRKFLSLCYDKTWTVFDYIEKDTPIFF
  EF3030          ALEKQISKTLSPILKSYLEEILSSFHQKQSHADSRKFLSLCYDKTWTVFDYIEKDTPIFF
                  ************************************************************
  
  TIGR4           DDYQKLMNQYEVFERDLAQYFTEELQNSKAFSDMQYFSDIEQIYKKQSPVTFFSNLQKGL
  D39             DDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQYFSDIEQIYKKQSPVTFFSNLQKGL
  D39V            DDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQYFSDIEQIYKKQSPVTFFSNLQKGL
  Hungary19A-6    DDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQYFSDIEQIYKKQSPVTFFSNLQKGL
  EF3030          DDYQKLMNQYEVFERELAQYFTEELQNSKAFSDMQYFSDIEQIYKKQSPVTFFSNLQKGL
                  ***************:********************************************
  
  TIGR4           GNLKFDKIYQFNQYPMQEFFNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEY
  D39             GNLKFDKIYQFNQYPMQEFFNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEY
  D39V            GNLKFDKIYQFNQYPMQEFFNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEY
  Hungary19A-6    GNLKFDKIYQFNQYPMQEFFNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEY
  EF3030          GNLKFDKIYQFNQYPMQEFFNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDMLEEY
                  ************************************************************
  
  TIGR4           QIKLDSRDKTNICKESVNLIEGNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQHVSNA
  D39             QIKLDSRDKTSICKESVNLIEGNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQHVSNA
  D39V            QIKLDSRDKTSICKESVNLIEGNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQHVSNA
  Hungary19A-6    QIKLDSRDKTSICKESVNLIEGNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQHVSNA
  EF3030          QIKLDSRDKTSICKESVNLIEGNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQHVSNA
                  **********.*************************************************
  
  TIGR4           ERLKDYNELEKGDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGDQISIPVEQIHL
  D39             ERLKDYNELEKGDYVVHHIHGIGQYLGIETIEIKEIHRDYVSVQYQNGDQISIPVEQIHL
  D39V            ERLKDYNELEKGDYVVHHIHGIGQYLGIETIEIKEIHRDYVSVQYQNGDQISIPVEQIHL
  Hungary19A-6    ERLKDYNELEKGDYVVHHIHGIGQYLGIETIEIKEIHRDYVSVQYQNGDQISIPVEQIHL
  EF3030          ERLKDYNELEKGDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGDQISIPVEQIHL
                  ********************************** *************************
  
  TIGR4           LSKYISSDGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFAFSADDD
  D39             LSKYISSDGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFAFSADDD
  D39V            LSKYISSDGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFAFSADDD
  Hungary19A-6    LSKYISSDGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFAFSADDD
  EF3030          LSKYISSDGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFAFSADDD
                  ************************************************************
  
  TIGR4           DQDAFDDAFPYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVND
  D39             DQDAFDDAFPYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVND
  D39V            DQDAFDDAFPYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVND
  Hungary19A-6    DQDAFDDAFPYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVND
  EF3030          DQDAFDDAFPYVETDDQLRSIEEIKRDMQASQPMDRLLVGDVGFGKTEVAMRAAFKAVND
                  ************************************************************
  
  TIGR4           HKQVVILVPTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTATLEKLKNGQVDILI
  D39             HKQVVILVPTTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILI
  D39V            HKQVVILVPTTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILI
  Hungary19A-6    HKQVVILVPTTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILI
  EF3030          HKQVVILVPTTVLAQQHYTNFKERFQNFAVNVDVLSRFRSKKEQTATLEKLKNGQVDILI
                  *******************************:****************************
  
  TIGR4           GTHRVLSKDVVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSML
  D39             GTHRVLSKDVVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSML
  D39V            GTHRVLSKDVVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSML
  Hungary19A-6    GTHRVLSKDVVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSML
  EF3030          GTHRVLSKDVVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSML
                  ************************************************************
  
  TIGR4           GIRDLSVIETPPTNRYPVQTYVLEKNDSVIRDAVLREMERGGQVYYLYNKVDTIVQKVSE
  D39             GIRDLSVIETPPTNRYPVQTYVLEKNDSVIRDAVLREMERGGQGYYLYNKVDTIVQKVSE
  D39V            GIRDLSVIETPPTNRYPVQTYVLEKNDSVIRDAVLREMERGGQGYYLYNKVDTIVQKVSE
  Hungary19A-6    GIRDLSVIETPPTNRYPVQTYVLEKNDSVIRDAVLREMERGGQGYYLYNKVDTIVQKVSE
  EF3030          GIRDLSVIETPPTNRYPVQTYVLEKNDSVIRDAVLREMERGGQVYYLYNKVDTIVQKVSE
                  ******************************************* ****************
  
  TIGR4           LQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENA
  D39             LQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENA
  D39V            LQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENA
  Hungary19A-6    LQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENA
  EF3030          LQELIPEASIGYVHGRMSEVQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENA
                  ************************************************************
  
  TIGR4           DHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMR
  D39             DHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMR
  D39V            DHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMR
  Hungary19A-6    DHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMR
  EF3030          DHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMR
                  ************************************************************
  
  TIGR4           DLSIRGAGNLLGKSQSGFIDSVGFELYSQLLEEAIAKRNGNANANTRTKGNAELILQIDA
  D39             DLSIRGAGNLLGKSQSGFIDSVGFELYSQLLEEAIAKRNGNANANTRTKGNAELILQIDA
  D39V            DLSIRGAGNLLGKSQSGFIDSVGFELYSQLLEEAIAKRNGNANANTRTKGNAELILQIDA
  Hungary19A-6    DLSIRGAGNLLGKSQSGFIDSVGFELYSQLLEEAIAKRNGNANANTRTKGNAELILQIDA
  EF3030          DLSIRGAGNLLGKSQSGFIDSVGFELYSQLLEEAIAKRNGNANANTRTKGNAELVLQIDA
                  ******************************************************:*****
  
  TIGR4           YLPDTYISDQRHKIEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLEIGLVKSYL
  D39             YLPDTYISDQRHKIEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLEIGLVKSYL
  D39V            YLPDTYISDQRHKIEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLEIGLVKSYL
  Hungary19A-6    YLPDTYISDQRHKIEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLEIGLVKSYL
  EF3030          YLPDTYISDQRHKIEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLEIGLVKSYL
                  ************************************************************
  
  TIGR4           DKVFVQRVERKDNKITIQFEKVTQRLFLAQDYFKALSVTNLKAGIAENKGLMELVFDVQN
  D39             DKVFVQRVERKDNKITIQFEKVTQRLFLAQDYFKALSVTNLKAGIAENKGLMELVFDVQN
  D39V            DKVFVQRVERKDNKITIQFEKVTQRLFLAQDYFKALSVTNLKAGIAENKGLMELVFDVQN
  Hungary19A-6    DKVFVQRVERKDNKITIQFEKVTQRLFLAQDYFKALSVTNLKAGIAENKGLMELVFDVQN
  EF3030          DKVFVQRVERKDNKITIQFEKVTQRLFLAQDYFKALSVTNLKAGIAENKGLMELVFDVQN
                  ************************************************************
  
  TIGR4           KKDYEILEGLLIFGESLLEIKESKEENSI
  D39             KKDYEILEGLLIFGESLLEIKESKEKNSI
  D39V            KKDYEILEGLLIFGESLLEIKESKEKNSI
  Hungary19A-6    KKDYEILEGLLIFGESLLEIKESKEENSI
  EF3030          KKDYEILEGLLIFGESLLEIKEFKEENSI
                  ********************** **:***