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PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BM6001
serotype 19F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7465
serotype 1
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

Summary[edit | edit source]

  • pan ID?: PNEUPAN000362000
  • symbol?: hslR
  • synonym:
  • description?: RNA-binding S4 domain-containing protein

      descriptions from strain specific annotations:

    • RNA-binding S4 domain-containing protein
    • S4 domain containing protein
    • ribosome-associated heat shock protein implicated in the recycling of the 50S subunit
    • S4 domain protein
    • ribosome-associated heat shock protein
    • Heat shock protein 15
    • S4 RNA-binding domain-containing protein
    • Conserved hypothetical protein
    • Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)
    • S4 domain
  • strand?: +
  • coordinates?: 365298..365564
  • occurrence?: in 100% of 43 strains

Orthologs[edit | edit source]

Genome Viewer[edit | edit source]

TIGR4
D39
D39V
Hungary19A-6
EF3030

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.505)


    TIGR4           MRLDKYLKVSRIIKRRTVAKEVADKGRIKVNGILAKSSTDLKVNDQVEIRFGNKLLLVKV
    D39             MRLDKYLKVSRIIKRRTVAKEVADKGRIKVNGILAKSSTDLKVNDQVEIRFGNKLLLVKV
    D39V            MRLDKYLKVSRIIKRRTVAKEVADKGRIKVNGILAKSSTDLKVNDQVEIRFGNKLLLVKV
    Hungary19A-6    MRLDKYLKVSRIIKRRTVAKEVADKGRIKVNGILAKSSTDLKVNDQVEIRFGNKLLLVKV
    EF3030          MRLDKYLKVSRIIKRRTVAKEVADKGRIKVNGILAKSSTDLKVNDQVEIRFGNKLLLVKV
                    ************************************************************

    TIGR4           LEMKDSTKKEDAAGMYEIISETRVEENV
    D39             LEMKDSTKKEDAAGMYEIISETRVEENV
    D39V            LEMKDSTKKEDAAGMYEIISETRVEENV
    Hungary19A-6    LEMKDSTKKEDAAGMYEIISETRVEENV
    EF3030          LEMKDSTKKEDAAGMYEIISETRVEENV
                    ****************************