PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN000664000
• symbol^?: —
• synonym:
• description^?: ISL3 family transposase

  descriptions from strain specific annotations:

  • ISL3 family transposase
  • ISL3-like element IS1167 family transposase
  • IS1167, transposase
  • putative IS1167 transposase
• strand^?: +
• coordinates^?: 769886..771949
• occurrence^?: in 35% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS07095
(2)
D39:
SPD_RS00225
(2)
D39V:
SPV_RS00225
(19A)
Hungary19A-6:
SPH_RS12880
(19F)
EF3030:
EF3030_RS10830
(6B)^?
670-6B:
—
(6A)
6A-10:
—
(5)
70585:
—
(19F)
A026:
—
(3)
A66:
—
(11A)
AP200:
—
(12F)
ASP0581:
—
(19F)
ATCC 49619:
—
(23F)
ATCC 700669:
SPN23F_RS06210
(19F)
BM6001:
—
(1)
BVJ1JL:
—
(14)
CGSP14:
—
(19F)
G54:
—
(1)
gamPNI0373:
—
(3)
HU-OH:
—
(19A)
Hu15:
—
(19A)
Hu17:
—
(1)
INV104:
INV104_RS11960
(14)
INV200:
—
(14)
JJA:
SPJ_RS11500
(19F)
MDRSPN001:
MDRSPN_RS08615
(1)
NCTC7465:
—
(2)
NCTC7466:
DQM66_RS00225
(4)
NU83127:
EL277_RS07170
(3)
OXC141:
—
(1)
P1031:
—
(2)
R6:
SPR_RS00225
(19A)
SP49:
BMJ42_RS12425
(1)
SPN032672:
SPN032672_RS12545
(3)
SPN034156:
—
(3)
SPN034183:
—
(3)
SPN994038:
—
(3)
SPN994039:
—
(3)
SPNA45:
—
(19F)
ST556:
—
(19F)
Taiwan19F-14:
—
(19A)
TCH8431/19A:
—
(4)
Xen35:
CXP32_RS07185

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MEQLHFITKLLDIKDPNIQILDIINKDTHKEIIAKLDYDAPSCPECGNQLKKYDFQKPSK
  D39             MEQLHFITKLLDIKDPNIQILDIINKDTHKEIIAKLDYDAPSCPECGNQLKKYDFQKPSK
  D39V            MEQLHFITKLLDIKDPNIQILDIINKDTHKEIIAKLDYDAPSCPECGNQLKKYDFQKPSK
  Hungary19A-6    MEQLHFITKLLDIKDPNVQILNIINKDTHKEIIAKLDYDAPSCPECGNQLKKYDFQKPSK
  EF3030          MEQLHFITKLLDIKDPNIQILDIINKDTHKEIIAKLDYDAPSCPECGSQMKKYDFQKPSK
                  *****************:***:*************************.*:**********
  
  TIGR4           IPYLETTGMPTRILLRKRRFKCYHCSKMMVAETSIVKKNHQIPRIINQKIAQKLIEKISM
  D39             IPYLETTGMPTRILLRKRRFKCYHCSKMMVAETSIVKKNHQIPRIINQKIAQKLIEKISM
  D39V            IPYLETTGMPTRILLRKRRFKCYHCSKMMVAETSIVKKNHQIPRIINQKIAQKLIEKISM
  Hungary19A-6    IPYLETTGMPTRILLRKRRFKCYHCSKMMVAETSIVKKNHQIPRIINQKIAQKLIEKISM
  EF3030          IPYLETTGMPTRILLRKRRFKCYQCSKIAVAETSLVKKNHQIPRIINQKIAQKLIEKISM
                  ***********************:***: *****:*************************
  
  TIGR4           TDIAHQLSISTSTVIRKLNDFHFKHDFSCLPEIMSWD-------EYAFTKGKMSFIAQDF
  D39             TDIAHQLSISTSTVIRKLNDFHFKHDFSRLPEIMSWEVETVRGVTVSIGRWKMSFIAQDF
  D39V            TDIAHQLSISTSTVIRKLNDFHFKHDFSRLPEIMSWEVETVRGVTVSIGRWKMSFIAQDF
  Hungary19A-6    TDIAHQLSISTSTVIRKLNDFHFECNFRNLPKIMSWDVETVRGVTVSIGRWKMSFIAQDF
  EF3030          TDIAHQLSISTSTVIRKLNDFHFKHDFSRLPEIMSWD-------EYAFTKGKMSFIAQDF
                  ***********************: :*  **:****:         :: : *********
  
  TIGR4           NNLNIITVLEGRTQAIIRNHFLKYDRAVRCRVKIITMDMFSPYYDLARQLFPCAKIVLDR
  D39             EKLDIITVLEGRTQAIIRNHFLRYDRVVRCRVKIITMDMFSPYYDLARQLFPCAKIVLDR
  D39V            EKLDIITVLEGRTQAIIRNHFLRYDRVVRCRVKIITMDMFSPYYDLARQLFPCAKIVLDR
  Hungary19A-6    EKLDIITVLEGRTQAVIRDHFLKYDRAVRCRVKIITMDMFSPYYDLARQLFPCAKIVLDR
  EF3030          NNLNIITVLEGRTQAIIRNHFLRYDRAVRCRVKIITMDMFSPYYDLARQLFPCAKIVLDR
                  ::*:***********:**:***:***.*********************************
  
  TIGR4           FHIVQHLSRAMSRVRVQIMNQLDRKSHEYKAIKRYWKLIQQDSRKLSDKHFYRPTFRMHL
  D39             FHIVQHLSRAMSRVRVQIMNQLDRKSHEYKAIKRYWKLIQQDSRKLSDKHFYRPTFRMHL
  D39V            FHIVQHLSRAMSRVRVQIMNQLDRKSHEYKAIKRYWKLIQQDSRKLSDKHFYRPTFRMHL
  Hungary19A-6    FHIVQHLSRAMSRVHVQIMNQFHRKSHEYKAIKRYWKLIQQDSRKLSDKRFYRPTFRMHL
  EF3030          FHIVQHLSRAMSRVRVQIMNQLDRKSHEYKAIKRYWKLIQQDSRKLSDKRFYRPTFRIHL
                  **************:******:.**************************:*******:**
  
  TIGR4           TNKEILNKLLSYSQDLKHHYQLYQLLLFHFQNKEPEKFFGLIEDNLKQVHPLFQTVFKTF
  D39             TNKEILDKLLSYSQDLKHHYQLYQLLLFHFQNKEPEKFFGLIEDNLKQVHPLFQTVFKTF
  D39V            TNKEILDKLLSYSQDLKHHYQLYQLLLFHFQNKEPEKFFGLIEDNLKQVHPLFQTVFKTF
  Hungary19A-6    TNKEILNKLLSYSEDLKHH---YQLLLFHFQNKEPEKFFELIEDNLKQVHPIFQTVFKTF
  EF3030          TNKEILNKLLSYSEDLKHHYQLYQLLLFHFQNKEPEKFFGLIEDNLKQVHPIFQTVFKTF
                  ******:******:*****   ***************** ***********:********
  
  TIGR4           LKDKEKIVNALQLHYSNAKLEATNNLIKLIKRNAFGFRNFENFKKRIFIALNIKKERTKF
  D39             LKDKEKIVNALQLPYSNAKLEATNNLIKLIKRNAFGFRNFENFKKRIFIALNIKKERTKF
  D39V            LKDKEKIVNALQLPYSNAKLEATNNLIKLIKRNAFGFRNFENFKKRIFIALNIKKERTKF
  Hungary19A-6    LKDKEKIINALQLPYSNAKLEATNNLIKLIKRNAFGFRNFENFKKRIFIALNIKKERTKF
  EF3030          LKDKEKIVNALQLHYSNTKLEATNNLIKLIKRNAFGFRNFENFKKRIFIALNIKKERTKF
                  *******:***** ***:******************************************
  
  TIGR4           VLSRA
  D39             VLSRA
  D39V            VLSRA
  Hungary19A-6    VLSRA
  EF3030          VLSRA
                  *****