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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN000788000
- symbol?: sdhB
- synonym: sdaAB
- description?: L-serine ammonia-lyase, iron-sulfur-dependent subunit beta
- L-serine ammonia-lyase, iron-sulfur-dependent subunit beta
- L-serine dehydratase, iron-sulfur-dependent, beta subunit
- putative L-serine dehydratase, beta chain
- L-serine dehydratase, beta chain
- L-serine dehydratase, iron-sulfur-dependent subunit beta
- L-serine ammonia-lyase, iron-sulfur-dependent, subunit beta
- L-serine dehydratase, beta subunit
- L-serine deaminase
- L-serine dehydratase beta subunit
- putative L-serine dehydratase beta subunit
- serine dehydratase
- serine dehydratase subunit beta
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 889360..890031
- occurrence?: in 100% of 41 strains
⊟Orthologs[edit | edit source]
SPN034156:
SPN034156_RS06740 (sdaAB)
SPN034183:
SPN034183_RS00755 (sdaAB)
SPN994038:
SPN994038_RS00760 (sdaAB)
Taiwan19F-14:
SPT_RS00710 (sdaAB)
TCH8431/19A:
HMPREF0837_RS01985 (sdaAB)
Xen35:
CXP32_RS00555 (sdaAB)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKSLRFQSVFDIIGPVMIGPSSSHTAGAVRIGKIVSSIFDDTPTEVEFQLFNSFAKTYRG
D39 MKSLRFQSVFDIIGPVMIGPSSSHTAGAVRIGKIVSSIFDDTPTEVEFQLFNSFAKTYRG
D39V MKSLRFQSVFDIIGPVMIGPSSSHTAGAVRIGKIVSSIFDDTPTEVEFQLFNSFAKTYRG
Hungary19A-6 MKSLRFQSVFDIIGPVMIGPSSSHTAGAVRIGKIVSSIFDDTPTEVEFQLFNSFAKTYRG
EF3030 MKSLRFQSVFDIIGPVMIGPSSSHTAGAVRIGKIVSSIFDDTPTEVEFQLFNSFAKTYRG
************************************************************
TIGR4 HGTDLALVAGILGMDTDDPEIPNSLEIAHKRGIKIVWTIQKDSNAPHPNTTKITVKNAHK
D39 HGTDLALVAGILGMDTDDPEIPNSLEIAHKRGIKIVWTIQKDSNAPHPNTTKITVKNAHK
D39V HGTDLALVAGILGMDTDDPEIPNSLEIAHKRGIKIVWTIQKDSNAPHPNTTKITVKNAHK
Hungary19A-6 HGTDLALVAGILGMNTDDPEIPNSLEIAHKRGIKIVWTIQKDSNAPHPNTTKITVKNAHK
EF3030 HGTDLALVAGILGMDTDDPEIPNSLEIAHKRGIKIVWTIQKDSNAPHPNTTKITVKNAHK
**************:*********************************************
TIGR4 TISVTGISIGGGNIQVTELNGFAVSLNMNTPTIIIVHQDIPGMIALVTEALSRYGINIAQ
D39 TISVTGISIGGGNIQVTELNGFAVSLNMNTPTIIIVHQDIPGMIALVTEALSRYGINIAQ
D39V TISVTGISIGGGNIQVTELNGFAVSLNMNTPTIIIVHQDIPGMIALVTEALSRYGINIAQ
Hungary19A-6 TISVTGISIGGGNIQVTELNGFAVSLNMNTPTIIIVHQDIPGMIALVTEALSRYGINIAQ
EF3030 TISVTGISIGGGNIQVTELNGFAVSLNMNTPTIIIVHQDIPGMIALVTEALSRYGINIAQ
************************************************************
TIGR4 MNVTREKAGEKAIMIIEVDSRNCDEAIEEIRKIPHLHNVNFFK
D39 MNVTREKAGEKAIMIIEVDSRNCDEAIEEIRKIPHLHNVNFFK
D39V MNVTREKAGEKAIMIIEVDSRNCDEAIEEIRKIPHLHNVNFFK
Hungary19A-6 MNVTREKAGEKAIMIIEVDSRNCDEAIEEIRKIPHLHNVNFFK
EF3030 MNVTREKAGEKAIMIIEVDSRNCDEAIEEIRKIPHLHNVNFFK
*******************************************