Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN000803000
- symbol?: tsaB
- synonym:
- description?: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB
- tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB
- glycoprotease family protein
- glycoprotein endopeptidase
- conserved hypothetical protein
- molecular chaperone
- tRNA threonylcarbamoyladenosine biosynthesis
- tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
- universal bacterial protein YeaZ
- inactive metal-dependent protease-like protein
- peptidase family M22
- peptidase M22
- TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 969666..970349
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
SPN034183:
SPN034183_RS00965 (tsaB)
SPN994038:
SPN994038_RS00895 (tsaB)
SPN994039:
SPN994039_RS00890 (tsaB)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKVLAFDTSSKALSLAILEDKQVLAETTINIKKNHSITLMPAIDFLMASLDWTPKDLDRI
D39 MKVLAFDTSSKALSLAILEDKQVLAETTINIKKNHSITLMPAIDFLMASLDWTPKDLDRI
D39V MKVLAFDTSSKALSLAILEDKQVLAETTINIKKNHSITLMPAIDFLMASLDWTPKDLDRI
Hungary19A-6 MKVLAFDTSSKALSLAILEDKQVLAETTINIKKNHSITLMPAIDFLMASLDWTPKDLDRI
EF3030 MKVLAFDTSSKALSLAILEDKQVLAETTINIKKNHSITLMPAIDFLMESLDWTPKDLDRI
*********************************************** ************
TIGR4 VVAEGPGSYTGLRIAVATAKTLAHTLNIELVGMSSLLALVPHQQEGLFVPLMDARRNNVY
D39 VVAEGPGSYTGLRIAVATAKTLAHTLNIELVGMSSLLALVPYQQEGLFIPLMDARRNNVY
D39V VVAEGPGSYTGLRIAVATAKTLAHTLNIELVGMSSLLALVPYQQEGLFIPLMDARRNNVY
Hungary19A-6 VVAEGPGSYTGLRIAVATAKTLAHTLNIELVGMSSLLALVPHQQEGLFVPLMDARRNNVY
EF3030 VVAEGPGSYTGLRIAVATAKTLTHTLNIELVGMSSLLALVPYQQEGLFVPLMDARRNNVY
**********************:******************:******:***********
TIGR4 AGFYENAKPVMAEAHLSFEEVLEKVKGTSQVTFVGEVGPFVEQIQKHLPRTDYKETLPNA
D39 AGFYENAKPVMAEAHLPFERVIELIKGASQVTFVGEVGPFVEQIQKHLPRTDYKETLPNA
D39V AGFYENAKPVMAEAHLPFERVIELIKGASQVTFVGEVGPFVEQIQKHLPRTDYKETLPNA
Hungary19A-6 AGFYENAKPVMAEAHLSFEEVLEKVKGTSQVTFVGEVGPFVEQIQKHLPRTDYKETLPNA
EF3030 AGFYENAKPVMPEAHLSFEEVLEKVKGASQVTFVGEVAPFVEQIQEHLPRTNYKETLPNA
***********.****.**.*:* :**:*********.*******:*****:********
TIGR4 ANLALLAWDKEADSLHDFVPNYLKRVEAEENWLKNHTESGESYIKRL
D39 ANLALLAWDKEADSLHDFVPNYLKRVEAEENWLKNHTESGESYIKRL
D39V ANLALLAWDKEADSLHDFVPNYLKRVEAEENWLKNHTESGESYIKRL
Hungary19A-6 ANLALLAWDKEADSLHDFVPNYLKRVEAEENWLKNHTESGESYIKRL
EF3030 ANLALLAWDKEADSLHDFVPNYLKRVEAEENWLKNHTESGESYIKRL
***********************************************