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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN000839000
- symbol?: vpoC
- synonym:
- description?: MFS transporter
- MFS transporter
- transporter, major facilitator family protein
- putative transport protein
- conserved hypothetical protein
- membrane protein
- (Putative) Major facilitator superfamily 1 type transporter
- Macrolide-efflux protein
- Permeases of the major facilitator superfamily
- putative membrane protein
- transmembrane secretion effector family protein
- transporter%2C major facilitator family protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1000746..1001972
- occurrence?: in 98% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKVFLQNRDFRQLTINQWISTLGDTIFYLAFLNYVADASFAPLAILLITISETLPQVLQI
D39 MKVFLQNRDFRQLTINQWISTLGDTIFYLAFLNYVADASFAPLAILLITISETLPQVLQI
D39V MKVFLQNRDFRQLTINQWISTLGDTIFYLAFLNYVADASFAPLAILLITISETLPQVLQI
Hungary19A-6 MKVFLQNRDFRQLTINQWISTLGDTIFYLAFLNYVADASFAPLAILLITISETLPQILQI
EF3030 MKVFLQNRDFRQLTINQWISTLGDTIFYLAFLNYVADASFAPLAILLITISETLPQVLQI
********************************************************:***
TIGR4 FLGVLADFQHHRVLKYTVISFAKFLLYSIVSLSLSGQSFSLLLVAFICLINLLSDTLSYF
D39 FLGVLADFQHHRVLKYTVISFAKFLLYSIVSLSLSGQSFSLLLVAFICLINLLSDTLSYF
D39V FLGVLADFQHHRVLKYTVISFAKFLLYSIVSLSLSGQSFSLLLVAFICLINLLSDTLSYF
Hungary19A-6 FLGVLADFQHHRVLKYTVISFAKFLLYSIVSLSLSGQSFSLLLVAFICLLNLLSDTLSYF
EF3030 FLGVLADFQHHRVLKYTVISFTKFLLYSIVSLSLSGQSFSLLLVTFICLLNLLSDTLSYF
*********************:**********************:****:**********
TIGR4 SGAMLTPIFIRIIGQDHLAEAIGFKQSTVSLVKTISNILGGVLLGILSIQFISLLNALTF
D39 SGAMLTPIFIRIIGQDHLAEAIGFKQSTVSLVKTISNILGGVLLGILSIQFISLLNALTF
D39V SGAMLTPIFIRIIGQDHLAEAIGFKQSTVSLVKTISNILGGVLLGILSIQFISLLNALTF
Hungary19A-6 SGAMLTPIFIRIIGQDHLAEAIGFKQSTVSLVKTISNILGGVLLGILSIQFISLLNALTF
EF3030 SGAMLTPIFIRIIGQDHLAEAIGFKQSTVSLVKTISNILGGVLLGILSIQFISLLNALTF
************************************************************
TIGR4 LIAFLGILFIKTDLLKVEKTISYQEGLSVKSFCQHLLQSSKLIWNMNKVLLVLFIISTSQ
D39 LIAFLGILFIKTDLLKVEKTINYQEGLSVKSFCQHLLQSSKLIWNMNKVLLVLFIISTSQ
D39V LIAFLGILFIKTDLLKVEKTINYQEGLSVKSFCQHLLQSSKLIWNMNKVLLVLFIISTSQ
Hungary19A-6 LIAFLGILFIKTDLLKVEKTINYQEGLSVKSFCQHLLQSSKLIWNMNKVLLVLFIISTSQ
EF3030 LIAFLGILFIKTDLLKVEKTISYQEGLSVKSFCQHLLQSSKLIWNMNKVLLVLFIISTSQ
*********************.**************************************
TIGR4 AVINVTVPISTLFLRNQPFLNLQTGQSLALLATLELSALIVGSLVSGYLQHTISIKTALY
D39 AVINVTVPVSTLFLRNQPFLNLQTGQSLALLSTFELSALIVGSLVSGYLQHTISIKTALY
D39V AVINVTVPVSTLFLRNQPFLNLQTGQSLALLSTFELSALIVGSLVSGYLQHTISIKTALY
Hungary19A-6 AVINVTVPVSTLFLRNQPFLNLQTGQSLALLSTFELSALIVGSLVSGYLQHTISIKTALY
EF3030 AVINVTVPISTLFLRNQPFLNLQTGQSLALLATLELSALILGSLMSGYLQHTISIKTALY
********:**********************:*:******:***:***************
TIGR4 ASLVIQLLLLVGFATVRFDWILIFSTLDAFFAGVLSPRLQELVFKQIPEESMGAVQSSIG
D39 ASLVIQLLLLVGFATVRFDWILIFSTLDAFFAGVLSPRLQELVFKQIPEESMGAVQSSIS
D39V ASLVIQLLLLVGFATVRFDWILIFSTLDAFFAGVLSPRLQELVFKQIPEESMGAVQSSIS
Hungary19A-6 ASLVIQLLLLVGFATVRFDWILIFSTLDAFFAGVLSPRLQELVFKQIPEESMGAVQSSIG
EF3030 ASLVIQLLLLVGFATVRFDWILIFSTLDAFFAGILSPRLQELVFKQIPEESMGAVQSSIG
*********************************:*************************.
TIGR4 AITVVLPSLFTIALVTIATSFGTLAVSFVLLLFLLVAFVMLLNIRESI
D39 AITVVLPSLFTISLVTIATSFGTLAVSFVLLLFLLVAFVMLLNIRESI
D39V AITVVLPSLFTISLVTIATSFGTLAVSFVLLLFLLVAFVMLLNIRESI
Hungary19A-6 AITVVLPSLFTIALVTIATSFGTLAVSFVLLLFLLVAFVMLLNIRESI
EF3030 AITVVLPSLFTIALVTIATSFGTLAVSFVLLLFLLVAFVMLLNIRESI
************:***********************************