Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN000980000
- symbol?: sorC_2
- synonym:
- description?: sugar-binding transcriptional regulator
- sugar-binding transcriptional regulator
- sugar-binding domain-containing protein
- transcriptional regulator
- putative sugar-binding regulatory protein
- Sorbitol operon regulator
- DNA-binding transcriptional regulator
- Conserved hypothetical protein
- DeoR faimly transcriptional regulator
- putative sugar-binding domain protein
- putative transcriptional activator
- transcriptional activator
- Transcriptional regulator, contains sigma factor-related N-terminal domain
- transcriptional regulator, putative
- winged helix-turn-helix DNA-binding family protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1144127..1145107
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MNQDRNKLLSKIAYLYYIENLNQSQIAAKLGIYRTSISRMLTEARNVGIVKIEIENFDTN
D39 MNQDRNKLLSKIAYLYYIENLNQSQIAAKLGIYRTSISRMLTEARNAGIVKIEIENFDTN
D39V MNQDRNKLLSKIAYLYYIENLNQSQIAAKLGIYRTSISRMLTEARNAGIVKIEIENFDTN
Hungary19A-6 MNQDRNKLLSKIAYLYYIENLNQSQIAAKLGIYRTSISRMLTEARNAGIVKIEIENFDTN
EF3030 MNQDRNKLLSKIAYLYYIENLNQSQIAAKLGIYRTSISRMLTEARNVGIVKIEIENFDTN
**********************************************.*************
TIGR4 MFKLENYVKEKYSLESLEIIPNEFDDTPTILSERISQVAAGVLRNLIDDNMKIGFSWGKS
D39 MFKLENYVKEKYGLESLEIIPNEFDDNPTILSERISQVAAGVLRNLIDDNMKIGFSWGKS
D39V MFKLENYVKEKYGLESLEIIPNEFDDNPTILSERISQVAAGVLRNLIDDNMKIGFSWGKS
Hungary19A-6 MFKLENYVKEKYGLESLEIIPNEFDDNPTILSERISQVAAGVLRNLIDDNMKIGFSWGKS
EF3030 MFKLENYVKEKYSLESLEIIPNEFDDTPTILSERISQVAAGVLRNLIDDNMKIGFSWGKS
************.*************.*********************************
TIGR4 LSNLVDLIHSKSVRNVHFYPLAGGPSHIHAKYHVNTLIYEMSRKFHGECTFMNATIVQEN
D39 LSNLVDLIHSKSVRNVHFYPLAGGPSHIHAKYHVNTLIYEMSRKFHGECTFMNATIVQEN
D39V LSNLVDLIHSKSVRNVHFYPLAGGPSHIHAKYHVNTLIYEMSRKFHGECTFMNATIVQEN
Hungary19A-6 LSNLVDLIHSKSVRNVHFYPLAGGPSHIHAKYHVNTLIYEMSRKFHGECTFMNATIVQEN
EF3030 LSNLVDLIHSKSVRNVHFYPLAGGPSHIHAKYHVNTLIYEMSRKFHGECTFMNATIVQEN
************************************************************
TIGR4 KLLADGILQSRYFENLKNSWKDLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTVG
D39 KLLADGILQSRYFENLKNSWKDLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTVG
D39V KLLADGILQSRYFENLKNSWKDLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTVG
Hungary19A-6 KLLADGILQSRYFENLKNSWKDLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTVG
EF3030 KLLADGILQSRYFENLKNSWKDLDIAVVGIGDFSNKGKHQWLDMLTEDDFKELTKVKTVG
************************************************************
TIGR4 EICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNH
D39 EICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNH
D39V EICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNH
Hungary19A-6 EICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNH
EF3030 EICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNH
************************************************************
TIGR4 LITDKNTILKVLEEDGDLTFREILGE
D39 LITDKNTILKVLEEDGDLTFREILGE
D39V LITDKNTILKVLEEDGDLTFREILGE
Hungary19A-6 LITDKNTILKVLEEDGDLTFREILGE
EF3030 LITDKNTILKVLEEDGDLTFREILGE
**************************