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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN000983000
- symbol?: PTS-EIIC_2
- synonym:
- description?: PTS sugar transporter subunit IIC
- PTS sugar transporter subunit IIC
- sugar phosphotransferase system (PTS), IIC component
- Lichenan permease IIC component
- lichenan permease iic component (pts system lichenan-specific eiiccomponent) (eiic-lic)
- PTS system, IIC component
- PTS system transporter subunit IIC
- permease IIC component
- PTS cellobiose transporter subunit IIC
- Cellobiose-specific PTS IIC component
- lichenan permease EIIC component
- Phosphotransferase system cellobiose-specific component IIC
- Phosphotransferase system sugar-specific EIIC component
- PTS family porter component IIC
- PTS system, cellobiose-specific IIC component
- PTS system, lactose/cellobiose IIC component family protein
- putative PTS system, cellobiose-specific IIC component
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1145994..1147286
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MSKMDVQKIIAPMMKFVNMRGIIALKDGMLAILPLTVVGSLFLIMGQLPFEGLNKSIASV
D39 MAKMDVQKIIAPMMKFVNMRGIIALKDGMLAILPLTVVGSLFLIMGQLPFEGLNKSIASV
D39V MAKMDVQKIIAPMMKFVNMRGIIALKDGMLAILPLTVVGSLFLIMGQLPFEGLNKSIASV
Hungary19A-6 MAKMDVQKIIASMMKFVNMRGIIALKDGMLAILPLTVVGSLFLIMGQLPFEGLNKSIASV
EF3030 MSKMDVQKIIAPMMKFVNMRGIIALKDGMLAILPLTVVGSLFLIMGQLPFEGLNKSIASV
*:*********.************************************************
TIGR4 FGANWTEPFMQVYSGTFAIMGLISCFSIAYSYAKNSGVEALPAGVLSVSAFFILLRSSYI
D39 FGANWTEPFMQVYSGTFAIMGLISCFSIAYSYAKNSGVEALPAGVLSVSAFFILLRSSYI
D39V FGANWTEPFMQVYSGTFAIMGLISCFSIAYSYAKNSGVEALPAGVLSVSAFFILLRSSYI
Hungary19A-6 FGANWTEPFMQVYSGTFAIMGLISCFSIAYSYAKNSGVEALPAGVLSVSAFFILLRSSYI
EF3030 FGANWTEPFMQVYSGTFAIMGLISCFSIAYSYAKNSGVEALPAGVLSVSAFFILLRSSYI
************************************************************
TIGR4 PKQGEAIGDAISKVWFGGQGIIGAIIIGLVVGSIYTFFIKRKIVIKMPEQVPQAIAKQFE
D39 PKQGEAIGDAISKVWFGGQGIIGAIIIGLVVGSIYTFFIKRKIVIKMPEQVPQAIAKQFE
D39V PKQGEAIGDAISKVWFGGQGIIGAIIIGLVVGSIYTFFIKRKIVIKMPEQVPQAIAKQFE
Hungary19A-6 PKQGEAIGDAISKVWFGGQGIIGAIIIGLVVGSIYTFFIKRKIVIKMPEQVPQAIAKQFE
EF3030 PKQGEAIGDAISKVWFGGQGIIGAIIIGLVVGSIYTFFIKRKIVIKMPEQVPQAIAKQFE
************************************************************
TIGR4 AMIPAFVIFLSSMIVYILAKSLTNGGTFIEMIYSAIQVPLQGLTGSLYGAIGIAFFISFL
D39 AMIPAFVIFLLSMIVYILAKSLTNGGTFIEMIYSAIQVPLQGLTGSLYGAIGIAFFISFL
D39V AMIPAFVIFLLSMIVYILAKSLTNGGTFIEMIYSAIQVPLQGLTGSLYGAIGIAFFISFL
Hungary19A-6 AMIPAFVIFLSSMIVYILAKSLTNGGTFIEMIYSAIQVPLQGLTGSLYGAIGIAFFISFL
EF3030 AMIPAFVIFLSSMIVYILAKSLTNGGTFIEMIYSAIQVPLQGLTGSLYGAIGIAFFISFL
********** *************************************************
TIGR4 WWFGVHGQSVVNGVVTALLLSNLDANKAMLASANLSLENGAHIVTQQFLDSFLILSGSGI
D39 WWFGVHGQSVVNGVVTALLLSNLDANKAMLASGNLSLENGAHIVTQQFLDSFLILSGSGI
D39V WWFGVHGQSVVNGVVTALLLSNLDANKAMLASGNLSLENGAHIVTQQFLDSFLILSGSGI
Hungary19A-6 WWFGVHGQSVVNGVVTALLLSNLDANKAMLASGNLSLENGAHIVTQQFLDSFLILSGSGI
EF3030 WWFGVHGQSVVNGVVTALLLSNLDANKTMLASANLSLENGAHIVTQQFLDSFLILSGSGI
***************************:****.***************************
TIGR4 TFGLVVAMLFAAKSKQYQALGKVAAFPAIFNVNEPVVFGFPIVMNPVMFVPFILVPVLAA
D39 TFGLVVAMLFAAKSKQYQALGKVAAFPAIFNVNEPVVFGFPIVMNPVMFVPFILVPVLAA
D39V TFGLVVAMLFAAKSKQYQALGKVAAFPAIFNVNEPVVFGFPIVMNPVMFVPFILVPVLAA
Hungary19A-6 TFGLVVAMLFAAKSKQYQALGKVAAFPAIFNVNEPVVFGFPIVMNPVMFVPFILVPVLAA
EF3030 TFGLVVAMLFAAKSKQYQALGKVAAFPAIFNVNEPVVFGFPIVMNPVMFVPFILVPVLAA
************************************************************
TIGR4 VIVYGAIATGFMQPFSGVTLPWSTPAILSGFLVGGWQGVITQLVILAMSTLVYFPFFKVQ
D39 VIVYGAIATGFMQPFSGVTLPWSTPAILSGFLVGGWQGVVTQLLVLVISTVVYFPFFKIQ
D39V VIVYGAIATGFMQPFSGVTLPWSTPAILSGFLVGGWQGVVTQLLVLVISTVVYFPFFKIQ
Hungary19A-6 VIVYGAIATGFMQPFSGVTLPWSTPAILSGFLVGGWQGVVTQLLVLAMSTMVYFPFFKIQ
EF3030 VIVYGAIATGFMQPFSGVTLPWSTPAILSGFLVGGWQGVVTQLLVLVISTVVYFPFFKIQ
***************************************:***::*.:**:*******:*
TIGR4 DRLAYQNEIKQS
D39 DRLAYQNEIKQS
D39V DRLAYQNEIKQS
Hungary19A-6 DRLACQNEIKQS
EF3030 DRLAYQNEIKQS
**** *******