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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001091000
- symbol?: pbp2x
- synonym:
- description?: penicillin-binding protein 2X
- penicillin-binding protein 2X
- penicillin-binding protein PBP2X
- putative penicillin binding protein 2x
- Cell division protein FtsI/penicillin-binding protein 2
- Cell division protein FtsI [Peptidoglycan synthetase]
- low-affinity penicillin-binding protein 2X
- PASTA domain-containing protein
- penicillin-binding protein
- penicillin-binding protein, transpeptidase domain protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1290101..1292353
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
(12F)
ASP0581:
EL334_RS01825 (pbp2X)
(19F)
ATCC 49619:
EL263_RS01865 (pbp2X)
(23F)
ATCC 700669:
SPN23F_RS01600 (pbp2X)
(19F)
G54:
SPG_RS01555 (pbp2X)
(1)
gamPNI0373:
HMPREF1038_RS01895 (pbp2X)
(3)
HU-OH:
EL271_RS01665 (pbp2X)
(19A)
Hu15:
SPNHU15_RS01935 (pbp2X)
(19A)
Hu17:
SPNHU17_RS01865 (pbp2X)
(1)
INV104:
INV104_RS01630 (pbp2X)
(14)
INV200:
SPNINV200_RS01605 (pbp2X)
(14)
JJA:
SPJ_RS01655 (pbp2X)
(19F)
MDRSPN001:
MDRSPN_RS01645 (pbp2X)
(1)
NCTC7465:
AT689_RS00810 (pbp2X)
(2)
NCTC7466:
DQM66_RS01675 (pbp2X)
(4)
NU83127:
EL277_RS01740 (pbp2X)
(19A)
SP49:
BMJ42_RS02355 (pbp2X)
(1)
SPN032672:
SPN032672_RS07915 (pbp2X)
(3)
SPN034156:
SPN034156_RS07805 (pbp2X)
(3)
SPN034183:
SPN034183_RS01890 (pbp2X)
(3)
SPN994038:
SPN994038_RS01815 (pbp2X)
(3)
SPN994039:
SPN994039_RS01810 (pbp2X)
(3)
SPNA45:
SPNA45_RS09525 (pbp2X)
(19F)
ST556:
MYY_RS02150 (pbp2X)
(19F)
Taiwan19F-14:
SPT_RS01945 (pbp2X)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKWTKRVIRYATKNRKSPAENRRRVGKSLSLLSVFVFAIFLVNFAVIIGTGTRFGTDLAK
D39 MKWTKRVIRYATKNRKSPAENRRRVGKSLSLLSVFVFAIFLVNFAVIIGTGTRFGTDLAK
D39V MKWTKRVIRYATKNRKSPAENRRRVGKSLSLLSVFVFAIFLVNFAVIIGTGTRFGTDLAK
Hungary19A-6 MKWTKRVIRYATKNRKSPAENRRRVGKSLSLLSVFVFAVFLVNFAVIIGTGTRFGTDLAK
EF3030 MKWTKRVIRYATKNRKSPAENRRRVGKSLSLLSVFVFAIFLVNFAVIIGTGTRFGTDLAK
**************************************:*********************
TIGR4 EAKKVHQTTRTVPAKRGTIYDRNGVPIAEDATSYNVYAVIDENYKSATGKILYVEKTQFN
D39 EAKKVHQTTRTVPAKRGTIYDRNGVPIAEDATSYNVYAVIDENYKSATGKILYVEKTQFN
D39V EAKKVHQTTRTVPAKRGTIYDRNGVPIAEDATSYNVYAVIDENYKSATGKILYVEKTQFN
Hungary19A-6 EAKKVHQTTRTVPAKRGTIYDRNGVPIAEDATSYNVYAVIDENYKSATGKILYVEKTQFN
EF3030 EAKKVHQTTRTVPAKRGTIYDRNGVPIAEDATSYNVYAVIDENYKSATGKILYVEKTQFN
************************************************************
TIGR4 KVAEVFHKYLDMEESYVREQLSQPNLKQVSFGAKGNGITYANMMSIKKELEAAEVKGIDF
D39 KVAEVFHKYLDMEESYVREQLSQPNLKQVSFGAKGNGITYANMMSIKKELEAAEVKGIDF
D39V KVAEVFHKYLDMEESYVREQLSQPNLKQVSFGAKGNGITYANMMSIKKELEAAEVKGIDF
Hungary19A-6 KVAEVFHKYLDMEESYVREQLSQPNLKQVSFGAKGNGITYANMMAIKKELETAEVKGIDF
EF3030 KVAEVFHKYLDMEESYVREQLSQPNLKQVSFGAKGNGITYANMMSIKKELEAAEVKGIDF
********************************************:******:********
TIGR4 TTSPNRSYPNGQFASSFIGLAQLHENEDGSKSLLGTSGMESSLNSILAGTDGIITYEKDR
D39 TTSPNRSYPNGQFASSFIGLAQLHENEDGSKSLLGTSGMESSLNSILAGTDGIITYEKDR
D39V TTSPNRSYPNGQFASSFIGLAQLHENEDGSKSLLGTSGMESSLNSILAGTDGIITYEKDR
Hungary19A-6 TTSPNRSYPNGQFASSFIGLAQLHENEDGSKSLLGTSGMESSLNSILAGTDGIITYEKDR
EF3030 TTSPNRSYPNGQFASSFIGLAQLHENEDGSKSLLGTSGMESSLNSILAGTDGIITYEKDR
************************************************************
TIGR4 LGNIVPGTEQVSQRTMDGKDVYTTISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGE
D39 LGNIVPGTEQVSQRTMDGKDVYTTISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGE
D39V LGNIVPGTEQVSQRTMDGKDVYTTISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGE
Hungary19A-6 VGNIVPGTELVSQQTVDGKDVYTTLSSPLQSFMETQMDAFLEKVKGKYMTATLVSAKTGE
EF3030 LGNIVPGTEQVSQRTMDGKDVYTTISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTGE
:******** ***:*:********:*************** *******************
TIGR4 ILATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSTMKVMMLAAAIDNNTFPGGEVFN
D39 ILATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSTMKVMMLAAAIDNNTFPGGEVFN
D39V ILATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSTMKVMMLAAAIDNNTFPGGEVFN
Hungary19A-6 ILATTQRPTFNADTKDGITKDFVWRDILYQGNYEPGSAMKVMTLASSIDNNTFPGGEYFN
EF3030 ILATTQRPTFDADTKEGITEDFVWRDILYQSNYEPGSTMKVMMLAAAIDNNTFPGGEVFN
**********:****:***:**********.******:**** **::********** **
TIGR4 SSELKIADATIRDWDVNEGLTGGRTMTFSQGFAHSSNVGMTLLEQKMGDATWLDYLNRFK
D39 SSELKIADATIRDWDVNEGLTGGRMMTFSQGFAHSSNVGMTLLEQKMGDATWLDYLNRFK
D39V SSELKIADATIRDWDVNEGLTGGRMMTFSQGFAHSSNVGMTLLEQKMGDATWLDYLNRFK
Hungary19A-6 SSESKIADVTTRDWDVNEGLTGGGMMTFSQGFAHSSNVGMILLEEKMGDTTWLDYLNRFK
EF3030 SSELKIADATIRDWDVNEGLTGGRTMTFSQGFAHSSNVGMTLLEQKMGDTTWLDYLNRFK
*** ****.* ************ *************** ***:****:**********
TIGR4 FGVPTRFGLTDEYAGQLPADNIVNIAQSSFGQGISVTQTQMIRAFTAIANDGVMLEPKFI
D39 FGVPTRFGLTDEYAGQLPADNIVNIAQSSFGQGISVTQTQMIRAFTAIANDGVMLEPKFI
D39V FGVPTRFGLTDEYAGQLPADNIVNIAQSSFGQGISVTQTQMIRAFTAIANDGVMLEPKFI
Hungary19A-6 FGVPTRFGLTDEYAGQLPADNIVSIAQSSFGQGISVTQTQMIRAFTAIANDGVMLEPKFI
EF3030 FGVPTRFGLTDEYAGQLPADNIVNIAQSSFGQGISVTQTQMIRAFTAIANDGVMLEPKFI
***********************.************************************
TIGR4 SAIYDPNDQTARKSQKEIVGNPVSKDAASLTRTNMVLVGTDPVYGTMYNHSTGKPTVTVP
D39 SAIYDPNDQTARKSQKEIVGNPVSKDAASLTRTNMVLVGTDPVYGTMYNHSTGKPTVTVP
D39V SAIYDPNDQTARKSQKEIVGNPVSKDAASLTRTNMVLVGTDPVYGTMYNHSTGKPTVTVP
Hungary19A-6 TALYDPNDQTVRKSQKEIVGNPVSKDAASQTRTQMVLVGTDPVYGTMYNHSTGKPIVTVP
EF3030 SAIYDPNDQTARKSQKEIVGNPVSKDAASLTRTNMVLVGTDPVYGTMYNHSTGKPTVTVP
:*:*******.****************** ***:********************* ****
TIGR4 GQNVALKSGTAQIADEKNGGYLVGLTDYIFSAVSMSPAENPDFILYVTVQQPEHYSGIQL
D39 GQNVALKSGTAQIADEKNGGYLVGLTDYIFSAVSMSPAENPDFILYVTVQQPEHYSGIQL
D39V GQNVALKSGTAQIADEKNGGYLVGLTDYIFSAVSMSPAENPDFILYVTVQQPEHYSGIQL
Hungary19A-6 GQNVALKSGTAQIADEKNGGYLVGPTNYIFSVVAMNPAENPDFILYVTVQQPEHYSGIQL
EF3030 GQNVALKSGTAQIADEKNGGYLVGLTDYIFSAVSMSPAENPDFILYVTVQQPEHYSGIQL
************************ *:****.*:*.************************
TIGR4 GEFANPILERASAMKDSLNLQTTAKALEQVSQQSPYPMPSVKDISPGDLAEELRRNLVQP
D39 GEFANPILERASAMKDSLNLQTTAKALEQVSQQSPYPMPSVKDISPGDLAEELRRNLVQP
D39V GEFANPILERASAMKDSLNLQTTAKALEQVSQQSPYPMPSVKDISPGDLAEELRRNLVQP
Hungary19A-6 GEFANPILERASAMKESLNLQSPAKNLDQVTTESSYAMPSIKDISPGELAETLRRNIVQP
EF3030 GEFANPILERASAMKDSLNLQTTAKALEQVSQQSPYPMPSVKDISPGDLAEELRRNLVQP
***************:*****:.** *:**: :*.*.***:******:*** ****:***
TIGR4 IVVGTGTKIKNSSAEEGKNLAPNQQVLILSDKAEEVPDMYGWTKETAETLAKWLNIELEF
D39 IVVGTGTKIKNSSAEEGKNLAPNQQVLILSDKAEEVPDMYGWTKETAETLAKWLNIELEF
D39V IVVGTGTKIKNSSAEEGKNLAPNQQVLILSDKAEEVPDMYGWTKETAETLAKWLNIELEF
Hungary19A-6 IVVGTGTKIKETSVEEGKNLAPNQQVLLLSDKVEEIPDMYGWKKETAETFAKWLDIELEF
EF3030 IVVGTGTKIKNSSAEEGKNLAPNQQVLILSDKAEEVPDMYGWTKETAETLAKWLNIELEF
**********::*.*************:****.**:******.******:****:*****
TIGR4 QGSGSTVQKQDVRANTAIKDIKKITLTLGD
D39 QGSGSTVQKQDVRANTAIKDIKKITLTLGD
D39V QGSGSTVQKQDVRANTAIKDIKKITLTLGD
Hungary19A-6 EGSGSIVQKQDVRTNTAIKNIKKIKLTLGD
EF3030 QGSGSTVQKQDVRANTAIKDIKKITLTLGD
:**** *******:*****:****.*****