PangenomeTIGR4

serotype 4

D39

serotype 2

D39V

serotype 2

Hungary19A-6

serotype 19A

EF3030

serotype 19F

670-6B

serotype 6B

6A-10

serotype 6A

70585

serotype 5

A026

serotype 19F

A66

serotype 3

AP200

serotype 11A

ASP0581

serotype 12F

ATCC 49619

serotype 19F

ATCC 700669

serotype 23F

BM6001

serotype 19F

BVJ1JL

serotype 1

CGSP14

serotype 14

G54

serotype 19F

HU-OH

serotype 3

Hu15

serotype 19A

Hu17

serotype 19A

INV104

serotype 1

INV200

serotype 14

JJA

serotype 14

MDRSPN001

serotype 19F

NCTC7465

serotype 1

NCTC7466

serotype 2

NU83127

serotype 4

OXC141

serotype 3

P1031

serotype 1

R6

serotype 2

SP49

serotype 19A

SPN032672

serotype 1

SPN034156

serotype 3

SPN034183

serotype 3

SPN994038

serotype 3

SPN994039

serotype 3

SPNA45

serotype 3

ST556

serotype 19F

TCH8431/19A

serotype 19A

Taiwan19F-14

serotype 19F

Xen35

serotype 4

gamPNI0373

serotype 1

⊟Summary

• pan ID^?: PNEUPAN001124000
• symbol^?: cps2B
• synonym: cps4B
• description^?: capsular polysaccharide biosynthesis protein Cps4B

  descriptions from strain specific annotations:

  • capsular polysaccharide biosynthesis protein Cps4B
  • Tyrosine-protein phosphatase CpsB
  • protein-tyrosine phosphatase Wzh (pseudogene)
  • tyrosine protein phosphatase
  • protein-tyrosine phosphatase Wzh
  • PHP domain protein
  • capsular polysaccharide biosynthesis protein Cps14B
  • capsule biosynthesis protein-tyrosine phosphatase Wzh
  • protein-tyrosine phosphatase
  • Tyrosine-protein phosphatase Cps2B
  • tyrosine-protein phosphatase wzh
  • pseudogene
• strand^?: +
• coordinates^?: 1330780..1331512
• occurrence^?: in 98% of 43 strains

⊟Orthologs

(4)^?
TIGR4:
SP_RS01695 (cps4B)
(2)
D39:
SPD_RS01720 (cps4B)
(2)
D39V:
SPV_RS01720 (cps4B)
(19A)
Hungary19A-6:
SPH_RS02215 (cps4B)
(19F)
EF3030:
EF3030_RS01680 (cps4B)
(6B)^?
670-6B:
SP670_RS02100 (cps4B)
(6A)
6A-10:
HKM25_RS01810 (cps4B)
(5)
70585:
SP70585_RS02030 (cps4B)
(19F)
A026:
T308_RS01735 (cps4B)
(3)
A66:
A66_RS11570 (cps4B)
(11A)
AP200:
SPAP_RS01855 (cps4B)
(12F)
ASP0581:
EL334_RS01870 (cps4B)
(19F)
ATCC 49619:
EL263_RS01905 (cps4B)
(23F)
ATCC 700669:
SPN23F_RS01650 (cps4B)
(19F)
BM6001:
ODS73_RS02180 (cps4B)
(1)
BVJ1JL:
JN057_RS01890 (cps4B)
(14)
CGSP14:
SPCG_RS01810 (cps4B)
(19F)
G54:
SPG_RS01600 (cps4B)
(1)
gamPNI0373:
HMPREF1038_RS01965 (cps4B)
(3)
HU-OH:
EL271_RS01710 (cps4B)
(19A)
Hu15:
SPNHU15_RS01980 (cps4B)
(19A)
Hu17:
SPNHU17_RS01910 (cps4B)
(1)
INV104:
INV104_RS01745 (cps4B)
(14)
INV200:
SPNINV200_RS01660 (cps4B)
(14)
JJA:
SPJ_RS01700 (cps4B)
(19F)
MDRSPN001:
MDRSPN_RS01690 (cps4B)
(1)
NCTC7465:
AT689_RS00745 (cps4B)
(2)
NCTC7466:
DQM66_RS01720 (cps4B)
(4)
NU83127:
EL277_RS01790 (cps4B)
(3)
OXC141:
SPNOXC_RS12140 (cps4B)
(1)
P1031:
SPP_RS01915 (cps4B)
(2)
R6:
—
(19A)
SP49:
BMJ42_RS02400 (cps4B)
(1)
SPN032672:
SPN032672_RS08045 (cps4B)
(3)
SPN034156:
SPN034156_RS12105 (cps4B)
(3)
SPN034183:
SPN034183_RS12150 (cps4B)
(3)
SPN994038:
SPN994038_RS12035 (cps4B)
(3)
SPN994039:
SPN994039_RS12040 (cps4B)
(3)
SPNA45:
SPNA45_RS13280
(19F)
ST556:
MYY_RS02205 (cps4B)
(19F)
Taiwan19F-14:
SPT_RS01995 (cps4B)
(19A)
TCH8431/19A:
HMPREF0837_RS03160 (cps4B)
(4)
Xen35:
CXP32_RS01745 (cps4B)

⊟Genome Viewer

TIGR4
D39
D39V
Hungary19A-6
EF3030

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
  
  
  TIGR4           MIDIHSHIVFDVDDGPKSREESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAENFL
  D39             MIDVHSHIVFDVDDGPKSREESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAENFL
  D39V            MIDVHSHIVFDVDDGPKSREESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAENFL
  Hungary19A-6    MIDIHSHIVFDVDDGPKSREESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAENFL
  EF3030          MIDIHSHIVFDVDDGPKSREESKALLAESYRQGVRTIVSTSHRRKGMFETPEEKIAENFL
                  ***:********************************************************
  
  TIGR4           QVREIAKEVASDLVIAYGAEIYYTPDVLDKLEKKRIPTLNDSRYALIEFSMNTPYRDIHS
  D39             QVREIAKEVADDLVIAYGAEIYYTPDVLDKLGKKRIPTLNDSRYALIEFSMNTPYRDIHS
  D39V            QVREIAKEVADDLVIAYGAEIYYTPDVLDKLGKKRIPTLNDSRYALIEFSMNTPYRDIHS
  Hungary19A-6    QVREIAKEVASDLVIAYGAEIYYTSDVLDKLEKNRIPTLNNSRYALIEFSMNTPYRDIHS
  EF3030          QVREIAKEVADDLVIAYGAEIYYTLDALEKLEKKEIPTLNDSRYALIEFSMHTSYRQIHT
                  **********.************* *.*:** *:.*****:**********:*.**:**:
  
  TIGR4           ALSKILMLGITPVIAHIERYDALENNEKRVRELIDMGCYTQVNSSHVLKPKLFGERYKFM
  D39             ALSKILMSGITPVIAHIERYDALGNNEKRVRELIDMGCYTQVNSSHVLKPKLFGERYKFM
  D39V            ALSKILMSGITPVIAHIERYDALGNNEKRVRELIDMGCYTQVNSSHVLKPKLFGERYKFM
  Hungary19A-6    ALSKILMLGITPVIAHIERYDALENNEKRVRELINMGCYTQVNSSHVLKSKLFGERYKFM
  EF3030          GLSNILMLGITPVIAHIERYDALENNEKRVRELIDMGCYTQINSYHVSKPKFFGEKYKFM
                  .**:*** *************** **********:******:** ** *.*:***:****
  
  TIGR4           KKRAQYFLEQDLVHVIASDMHNLDGRPPHMAEAYDLVTQKYGEAKAQELFIDNPRKIVMD
  D39             KKRAQYFLEQDLVHVIASDMHNLDGRPPHMAEAYDLVTQKYGEAKAQELFIDNPRKIVMD
  D39V            KKRAQYFLEQDLVHVIASDMHNLDGRPPHMAEAYDLVTQKYGEAKAQELFIDNPRKIVMD
  Hungary19A-6    KKRAQYFLERDLVHIIASDMHNVDSRPPHMAEAYDLVSQKYGEAKAQELFIDNPRKIVMD
  EF3030          KKRARYFLERDLVHVVASDMHNLDSRPPYMQQAYDIIAKKYGAKKAKELFVDNPRKIIMD
                  ****:****:****::******:*.***:* :***::::***  **:***:******:**
  
  TIGR4           QLI
  D39             QLI
  D39V            QLI
  Hungary19A-6    QLI
  EF3030          QLI
                  ***