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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001125000
- symbol?: cps2C
- synonym: cpsC
- description?: capsular polysaccharide biosynthesis protein CpsC
- capsular polysaccharide biosynthesis protein CpsC
- capsular polysaccharide biosynthesis protein Wzd
- capsular polysaccharide biosynthesis protein
- Cps19aC
- putative capsular polysaccharide biosynthesis
- capsular polysaccharide biosynthesis protein Cap5A
- capsular polysaccharide biosynthesis protein Cps14C
- Capsular biosynthesis protein Cps2C
- capsular biosynthesis protein CpsC
- capsular polysaccharide biosynthesis protein Cps4C
- capsular polysaccharide biosynthesis protein wzh
- capsule biosynthesis chain length determinant protein Wzd
- chain length determinant family protein
- chain length determinant protein/polysaccharide export protein, MPA1 family protein
- polysaccharide export protein, MPA1 family
- putative capsular polysaccharide biosynthesis protein YwqC
- Tyrosine-protein kinase transmembrane modulator EpsC
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1331725..1333511
- occurrence?: in 98% of 43 strains
⊟Orthologs[edit | edit source]
(14)
INV200:
SPNINV200_RS01665 (cpsC)
(14)
JJA:
SPJ_RS01705 (cpsC)
(19F)
MDRSPN001:
MDRSPN_RS01695 (cpsC)
(19A)
SP49:
BMJ42_RS02405 (cpsC)
(1)
SPN032672:
SPN032672_RS08050 (cpsC)
(3)
SPN034156:
SPN034156_RS07855 (cpsC)
(3)
SPN034183:
SPN034183_RS01940 (cpsC)
(3)
SPN994038:
SPN994038_RS01865 (cpsC)
(3)
SPN994039:
SPN994039_RS01860 (cpsC)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKEQNTIEIDVFQLVKSLWKRKLMILIVALVTGAGAFAYSTFIVKPEYTSTTRIYVVNRN
D39 MKEQNTIEIDVFQLFKTLWKRKLMILLVALVTGAGAFAYSTFIVKPEYTSTTRIYVVNRN
D39V MKEQNTIEIDVFQLFKTLWKRKLMILLVALVTGAGAFAYSTFIVKPEYTSTTRIYVVNRN
Hungary19A-6 MKEQNTIEIDVFQLLKTLWKHKLIILLVALVTGAGAFAYSTFIVKPEYTSTTRIYVVNRN
EF3030 MKEQNTLEIDVLQLFRALWKRKLVILLVAIITSSVAFAYSTFVIKPEFTSMTRIYVVNRD
******:****:**.::***:**:**:**::*.: *******::***:** ********:
TIGR4 QGDKPGLTNQDLQAGTYLVKDYREIILSQDVLEEVVSDLKLDLTPKGLANKIKVTVPVDT
D39 QGDKSGLTNQDLQAGSYLVKDYREIILSQDALEKVATNLKLDMPAKTLASKVQVTVPTDT
D39V QGDKSGLTNQDLQAGSYLVKDYREIILSQDALEKVATNLKLDMPAKTLASKVQVTVPTDT
Hungary19A-6 QGDKPGLTNQDLQAGTYLVKDYREIILSQDVLEKVATNLKLDIPAKTLTSKVQVTVPADT
EF3030 QGEKSGLTNQDLQAGSSLVKDYREIILSQDVLEEVVSDLKLDLTPKDLANKIKVTVPVDT
**:*.**********: *************.**:*.::****:..* *:.*::****.**
TIGR4 RIVSISVNDRVPEEASRIANSLREVAAQKIISITRVSDVTTLEEARPAISPSSPNIKRNT
D39 RIVSISVKDKQPEEASRIANSLREVAVEKIVAVTRVSDVTTLEEARPATTPSSPNVRRNS
D39V RIVSISVKDKQPEEASRIANSLREVAVEKIVAVTRVSDVTTLEEARPATTPSSPNVRRNS
Hungary19A-6 RIVSISVKDKQPEEASRIANSLREVAAEKIIAVTRVSDVTTLEEARPATTPSSPNVRRNT
EF3030 RIVSVSVSDRVPEEASRIANSLREVAAQKIISITRVSDVTTLEEARPATSPSSPNIKRST
****:**.*: ***************.:**:::*************** :*****::*.:
TIGR4 LIGFLAGVIGTSVIVLHLELLDTRVKRPEDIENTLQMTLLGVVPNLGKLK
D39 LFGFLGGAVVTVIAVLLIELFDTRVKRPEDIEDVLQIPLLGLVPDLDKMK
D39V LFGFLGGAVVTVIAVLLIELFDTRVKRPEDIEDVLQIPLLGLVPDLDKMK
Hungary19A-6 LVGFLGGAAVTVITVLLIELLDTRVKRPEDVEDVLQMPLLGVVPDFDKMK
EF3030 LIGFLAGVIGTSVIVLILELLDTRVKRPKDIEDTLQMTLLGIVPNLNKLK
*.***.*. * : ** :**:*******:*:*:.**:.***:**::.*:*