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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001134000
- symbol?: clpL
- synonym:
- description?: ATP-dependent Clp protease ATP-binding subunit
- ATP-dependent Clp protease ATP-binding subunit
- putative ATP-dependent protease ATP-binding subunit ClpL
- ATP-dependent Clp protease ATP-binding subunit ClpL
- putative ATP-dependent Clp protease ATP-binding protein
- ATP-dependent Clp protease, ATP-binding subunit
- ATP-dependent Clp protease, ATP-binding subunit, putative
- putative ATP-dependent Clp protease ATP-binding subunit
- ATPase family associated with various cellular activities (AAA)
- ATP-dependent Clp protease ATP-binding protein
- ATP-dependent protease ATP-binding subunit
- ATP-dependent protease ATP-binding subunit ClpL
- Clp protease ClpX
- Group II intron maturase
- putative ATP-dependent Clp protease, ATP-binding subunit
- putative ATP-dependent Clp proteinase (ATP-binding subunit)
- Putative ATP-dependent Clp proteinase ATP-binding subunit ClpL
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1316672..1318804
- occurrence?: in 100% of 41 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MNNNFNNFNNMDDLFNQLMGGMRGYSSENRRYLINGREVTPEEFAHYRATGQLPGNAETD
D39 MNNNFNNFNNMDDLFNQLMGGMRGYSSENRRYLINGREVTPEEFAYYRATGQLPGNAESD
D39V MNNNFNNFNNMDDLFNQLMGGMRGYSSENRRYLINGREVTPEEFAYYRATGQLPGNAESD
Hungary19A-6 MNNNFNNFNNMDDLFNQLMGGMRGYSSENRRYLINGREVTPEEFAHYRATGQLPGNAEVD
EF3030 MNNNFNNFNNMDDLFNQLMGGMRGYSSENRRYLINGREVTPEEFAHYRATGQLPGNAETD
*********************************************:************ *
TIGR4 VQMPQQASGMKQGGVLAKLGRNLTAEAREGKLDPVIGRNKEIQETSEILSRRTKNNPVLV
D39 VQMQQQASGMKQDGVLAKLGRNLTAEAREGKLDPVIGRNKEIQEASEILSRRTKNNPVLV
D39V VQMQQQASGMKQDGVLAKLGRNLTAEAREGKLDPVIGRNKEIQEASEILSRRTKNNPVLV
Hungary19A-6 GKMPQQASSMKQDGVLAKLGRNLTAEAREGKLDPVIGRNKEIQETSEILSRRTKNNPVLV
EF3030 VQMPQQASGMKQDGVLAKLGRNLTAEAREGKLDPVIGRNKEIQETSEILSRRTKNNPVLV
:* ****.***.*******************************:***************
TIGR4 GDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEAGTQYRGSFEENVQNLVNE
D39 GDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIVSIDISGLEAGTQYRGSFEENVQNLVNE
D39V GDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIVSIDISGLEAGTQYRGSFEENVQNLVNE
Hungary19A-6 GDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEAGTQYRGSFEENVQNLVNE
EF3030 GDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEAGTQYRGSFEENVQNLVNE
********************************:***************************
TIGR4 VKEAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTI
D39 VKEAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTI
D39V VKEAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTI
Hungary19A-6 VKEAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTI
EF3030 VKEAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTI
************************************************************
TIGR4 LKNAALARRFNEVKVNAPSAENTFKILQGIRDLYQQHHNVILPDEVLKAAVDYSVQYIPQ
D39 LKNAALARRFNEVKVNAPSAENTFKILQGIRDLYQQHHNVILPDEVLKAAVDYSVQYIPQ
D39V LKNAALARRFNEVKVNAPSAENTFKILQGIRDLYQQHHNVILPDEVLKAAVDYSVQYIPQ
Hungary19A-6 LKNAALARRFNEVKVNAPSAENTFKILQGIRDLYQQHHNVILPDEVLKAAVDYSVQYIPQ
EF3030 LKNAALARRFNEVKVNAPSAENTFKILQGIRDLYQQHHNVILPDEVLKAAVDYSVQYIPQ
************************************************************
TIGR4 RSLPDKAIDLVDVTAAHLAAQHPVTDVHAVEREIETEKDKQEKAVEAEDFEAALNYKTRI
D39 RSLPDKAIDLVDVTAAHLAAQHPVTDVHAVEREIETEKDKQEKAVEAEDFEAALNYKTRI
D39V RSLPDKAIDLVDVTAAHLAAQHPVTDVHAVEREIETEKDKQEKAVEAEDFEAALNYKTRI
Hungary19A-6 RSLPDKAIDLVDVTAAHLAAQHPVTDVHAVEREIETEKDKQEKAVEAEDFEAALNYKTRI
EF3030 RSLPDKAIDLVDVTAAHLAAQHPVTDVHAVEREIETEKDKQEKAVEAEDFEAALNYKTRI
************************************************************
TIGR4 AELERKIENHTEDMKVTASVNDVAESVERMTGIPVSQMEASDIERLKDMAHRLQDKVIGQ
D39 AELERKIENHTEDMKVTASVNDVAESVERMTGIPVSQMGASDIERLKDMAHRLQDKVIGQ
D39V AELERKIENHTEDMKVTASVNDVAESVERMTGIPVSQMGASDIERLKDMAHRLQDKVIGQ
Hungary19A-6 AELEKKIENHTEDMKVTASVNDVAESVERMTGIPVSQMGASDIERLKDMAHRLQDKVIGQ
EF3030 AELEKKIENHTEDMKVTASVNDVAESVERMTGIPVSQMGASDIERLKDMAHRLQDKVIGQ
****:********************************* *********************
TIGR4 DKAVEVVARAIRRNRAGFDEGNRPIGNFLFVGSTGVGKTELAKQLALDMFGTQDAIIRLD
D39 DKAVEVVARAICRNRAGFDEGNRPIGNFLFVGSTGVGKTELAKQLALDMFGTQDAIIRLD
D39V DKAVEVVARAICRNRAGFDEGNRPIGNFLFVGSTGVGKTELAKQLALDMFGTQDAIIRLD
Hungary19A-6 DKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGKTELAKQLALDMFGTQDAIIRLD
EF3030 DKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGKTELAKQLALDMFGTQDAIIRLD
*****.***** **************.*********************************
TIGR4 MSEYSDRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQ
D39 MSEYSDRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQ
D39V MSEYSDRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQ
Hungary19A-6 MSEYSDRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQ
EF3030 MSEYSDRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQ
************************************************************
TIGR4 VLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYEANLTEDADKPELMDRLKPFFRPEFLNR
D39 VLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYEANLTEDADKPELMDRLKPFFRPEFLNR
D39V VLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYEANLTEDADKPELMDRLKPFFRPEFLNR
Hungary19A-6 VLDDGRLTDGQGNTVNFKNTVVIATSNAGFGYEANLTEDADKPELMDRLKPFFRPEFLNR
EF3030 VLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYEANLTEDADKPELMDRLKPFFRPEFLNR
*********************:**************************************
TIGR4 FNAVIEFSHLTKEDLSKIVDLMLAEVNQTLAKKDIDLVVSQAAKDYITEEGYDEVMGVRP
D39 FNAVIEFSHLTKEDLSKIVDLMLAEVNQTLAKKDIDLVVSQAAKDYITEEGYDEVMGVRP
D39V FNAVIEFSHLTKEDLSKIVDLMLAEVNQTLAKKDIDLVVSQAAKDYITEEGYDEVMGVRP
Hungary19A-6 FNAVIEFSHLTKENLSKIVDLMLAEVNQTLAKKDIDLVVSQAAKDYITEEGYDEVMGVRP
EF3030 FNAVIEFSHLTKEDLSKIVDLMLAEVNQTLAKKDIDLVVSQAAKDYITEEGYDEVMGVRP
*************:**********************************************
TIGR4 LRRVVEQEIRDKVTDFHLDHLDAKHLEADMEDGVLVIREKV
D39 LRRVVEQEIRDKVTDFHLDHLDAKHLEADMEDGVLVIREKV
D39V LRRVVEQEIRDKVTDFHLDHLDAKHLEADMEDGVLVIREKV
Hungary19A-6 LRRVVEQEIRDKVTDFHLDHLDAKHLEADMEDGVLVIREKA
EF3030 LRRVVEQEIRDKVTDFHLDHLDAKHLEADMEDGVLVIREKA
****************************************.