Jump to navigation
Jump to search
PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001211000
- symbol?: ritR
- synonym:
- description?: response regulator transcription factor
- response regulator transcription factor
- DNA-binding response regulator
- response regulator protein
- Response regulator
- Response regulator ArlR
- choline binding protein J
- transcriptional regulator
- Reponse regulator for regulation of iron transport
- Response regulator CsrR
- response regulator receiver domain protein
- Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
- RitR response regulator
- transcriptional regulatory, C terminal family protein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1512375..1513064
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MGKRILLLEKERNLAHFLSLELQKEQYRVDLVEEGQKALSMALQTDYDLMLLNVNLGDMM
D39 MGKRILLLEKERNLAHFLSLELQKEQYRVDLVEEGQKALSMALQTDYDLILLNVNLGDMM
D39V MGKRILLLEKERNLAHFLSLELQKEQYRVDLVEEGQKALSMALQTDYDLILLNVNLGDMM
Hungary19A-6 MGKRILLLEKERNLAHFLSLELQKEQYRVDLVEEGQKALSMALQTDYDLILLNVNLGDMM
EF3030 MGKRILLLEKERNLAHFLSLELQKEQYRVDLVEEGQKALSMALQTDYDLMLLNVNLGDMM
*************************************************:**********
TIGR4 AQDFAEKLSRTKPASVIMILDHWEDLQEELEVVQRFAVSYIYKPVLIENLVARISAIFRG
D39 AQDFAEKLSRTKPASVIMILDHWEDLQEELEVVQRFAVSYIYKPVLIENLVARISAIFRG
D39V AQDFAEKLSRTKPASVIMILDHWEDLQEELEVVQRFAVSYIYKPVLIENLVARISAIFRG
Hungary19A-6 AQDFAEKLSRTKPASVIMILDHWEDLQEELEVVQRFAVSYIYKPVLIENLVARISAIFRG
EF3030 AQDFAEKLSRTKPASVIMILDHWEDLQEELEVVQRFAVSYIYKPVFIENLVARISAIFRG
*********************************************:**************
TIGR4 RDFIDQHCSLMKVPRTYRNLRIDVEHHTVYRGEEMIALTRREYDLLATLMGSKKVLTREQ
D39 RDFIDQHCSLMKVPRTYRNLRIDVEHHTVYRGEEMIALTRREYDLLATLMGSKKVLTREQ
D39V RDFIDQHCSLMKVPRTYRNLRIDVEHHTVYRGEEMIALTRREYDLLATLMGSKKVLTREQ
Hungary19A-6 RDFIDQHCSLMKVPRTYRNLRIDVEHHTVYRGEEMIALTRREYDLLATLMGSKKVLTREQ
EF3030 RDFIDQHCSLMKVPRTYRNLRIDVEHHTVYRGEEMIALTRREYDLLATLMGSKKVLTREQ
************************************************************
TIGR4 LLESVWKYESATETNIVDVYIRYLRSKLDVKGQKSYIKTVRGVGYTMQE
D39 LLESVWKYESATETNIVDVYIRYLRSKLDVKGQKSYIKTVRGVGYTMQE
D39V LLESVWKYESATETNIVDVYIRYLRSKLDVKGQKSYIKTVRGVGYTMQE
Hungary19A-6 LLESVWKYESATETNIVDVYIRYLRSKLDVKGQKSYIKTVRGVGYTMQE
EF3030 LLESVWKYESATETNIVDVYIRYLRSKLDVKGQKSYIKTVRGVGYTMQE
*************************************************