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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001233000
- symbol?: cbpK
- synonym: cbpF
- description?: choline-binding protein CbpF
- choline-binding protein CbpF
- choline binding protein F
- Choline-binding protein
- choline binding protein F (pseudogene)
- Choline binding protein J
- Autolysin
- Choline-binding protein CbpK
- Toxin A
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1530674..1531702
- occurrence?: in 53% of 43 strains
⊟Orthologs[edit | edit source]
(12F)
ASP0581:
EL334_RS02115 (cbpF)
(19F)
ATCC 49619:
EL263_RS02150 (cbpF)
(23F)
ATCC 700669:
SPN23F_RS01880 (cbpF)
(19A)
SP49:
—
(1)
SPN032672:
—
(3)
SPN034156:
—
(3)
SPN034183:
—
(3)
SPN994038:
—
(3)
SPN994039:
—
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKLLKKMMQIALATFFFGLLATNTVFADDSEGWQFVQENGRTYYKKGDLKETYWRVIDGK
D39 MKLLKKMMQVALATFFFGLLGTSTVFADDSEGWQFVQENGRTYYKKGALKETYWRVIDGK
D39V MKLLKKMMQVALATFFFGLLGTSTVFADDSEGWQFVQENGRTYYKKGALKETYWRVIDGK
Hungary19A-6 MKLLKKMMQVALATFFFGLLGTSTVFADDSEGWQFVQENGRTYYKKGDLKETYWRVIDGK
*********:**********.*.************************ ************
TIGR4 YYYFDPLSGEMVVGWQYIPAPHKGVTIGPSPRIEIALRPDWFYFGQDGVLQEFVGKQVLE
D39 YYYFDPLSGEMVVGWQYIPAPHKGVTIGPSPRIEIALRPDWFYFGQDGVLQEFVGKQVLE
D39V YYYFDPLSGEMVVGWQYIPAPHKGVTIGPSPRIEIALRPDWFYFGQDGVLQEFVGKQVLE
Hungary19A-6 YYYFDPLSGEMVVGWQYIPAPHKGVTIGPSPRIEIALRPDWFYFGQDGVLQEFVGKQVLE
************************************************************
TIGR4 AKTATNTNKHHGEEYDSQAEKRVYYFEDQRSYHTLKTGWIYEEGHWYYLQKDGGFDSRIN
D39 AKTATNTNKHHGEEYDSQAEKRVYYFEDQRSYHTLKTGWIYEEGYWYYLQKDGGFDSRIN
D39V AKTATNTNKHHGEEYDSQAEKRVYYFEDQRSYHTLKTGWIYEEGYWYYLQKDGGFDSRIN
Hungary19A-6 AKTATNTNKHHGEEYDSPAEKRVYYFEDQRSYHTLKTGWIYEEGHWYYLQKDGGFDSRIN
***************** **************************:***************
TIGR4 RLTVGELARGWVKDYPLTYDEEKLKAAPWYYLNPATGIMQTGWQYLGNRWYYLHSSGAMA
D39 RLTVGELARGWVKDYPLTYDEEKLKAAPWYYLDPA-------------------------
D39V RLTVGELARGWVKDYPLTYDEEKLKAAPWYYLDPA-------------------------
Hungary19A-6 RLTVGELARGWVKDYPLTYDEEKLKAAPWYYLDPTTGIMQTGWQHLGNKWYYLRSSGAMA
********************************:*:
TIGR4 TGWYKEGSTWYYLDAENGDMRTGWQNLGNKWYYLRSSGAMATGWYQESSTWYYLNASNGD
D39 ---------------------TGWQNLGNKWYYLRSSGAMATGWYQEGSTWYYLNASNGD
D39V ---------------------TGWQNLGNKWYYLRSSGAMATGWYQEGSTWYYLNASNGD
Hungary19A-6 TGWYQDGSTWYYLDAENGDMKTGWQNLGNKWYYLRSSGAMATGWYQEGSTWYYLNASNGD
**************************.************
TIGR4 MKTGWFQVNGNWYYAYDSGALAVNTTVGGYYLNYNGEWVK
D39 MKTGWFQVNGNWYYAYDSGALAVNTTVGGYYLNYNGEWVK
D39V MKTGWFQVNGNWYYAYDSGALAVNTTVGGYYLNYNGEWVK
Hungary19A-6 MKTGWFQVNGNWYYAYDSGALAVNTTVGGYYLNYNGEWVK
****************************************