From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

Summary[edit | edit source]

  • pan ID?: PNEUPAN001292000
  • symbol?: accB
  • synonym:
  • description?: acetyl-CoA carboxylase biotin carboxyl carrier protein

      descriptions from strain specific annotations:

    • acetyl-CoA carboxylase biotin carboxyl carrier protein
    • Biotin carboxyl carrier protein of acetyl-CoA carboxylase
    • acetyl-CoA carboxylase, biotin carboxyl carrier protein
    • acetyl-CoA carboxylase
    • acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
    • Biotin carboxyl carrier protein of acetyl-CoA
    • acetyl-CoA carboxylase, bitoin carboxyl carrier protein
    • Biotin carboxyl carrier protein
  • strand?: +
  • coordinates?: 1572503..1572988
  • occurrence?: in 100% of 41 strains

Orthologs[edit | edit source]

Genome Viewer[edit | edit source]

TIGR4
D39
D39V
Hungary19A-6
EF3030

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.505)


    TIGR4           MNLNDIKDLMTQFDQSSLREFSYKNGTDELQFSKNEARPVPEVATQVAPAPVLATPSPVA
    D39             MNLNDIKDLMTQFDQSSLREFSYKNGTDELQFSKNEARPVPEVATQVAPAPVLATPSPVA
    D39V            MNLNDIKDLMTQFDQSSLREFSYKNGTDELQFSKNEARPVPEVATQVAPAPVLATPSPVA
    Hungary19A-6    MNLNDIKDLMTQFDQSSLREFSYKNGTDELQFSKNEARPVPEVATQVAPAPVLATPSPVA
    EF3030          MNLNDIKDLMTQFDQSSLREFSYKNGTDELQFSKNEARPVPEVATQVAPAPVLATPSPVA
                    ************************************************************

    TIGR4           PTSAPAETVAEEVPAPAEASVATEGNLVESPLVGVVYLAAGPDKPAFVTVGDSVKKGQTL
    D39             PTSAPAETVAEEVPAPAEASVATEGNLVESPLVGVVYLAAGPDKPAFVTVGDSVKKGQTL
    D39V            PTSAPAETVAEEVPAPAEASVATEGNLVESPLVGVVYLAAGPDKPAFVTVGDSVKKGQTL
    Hungary19A-6    PTSAPAETVAEEVPAPAEASVATEGNLVESPLVGVVYLAAGPDKPAFVTVGDSVKKGQTL
    EF3030          PTSAPAETVAEEVPAPAEASVATEGNLVESPLVGVVYLAAGPDKPAFVTVGDSVKKGQTL
                    ************************************************************

    TIGR4           VIIEAMKVMNEIPAPKDGVVTEILVSNEEMVEFGKGLVRIK
    D39             VIIEAMKVMNEIPAPKDGVVTEILVSNEEMVEFGKGLVRIK
    D39V            VIIEAMKVMNEIPAPKDGVVTEILVSNEEMVEFGKGLVRIK
    Hungary19A-6    VIIEAMKVMNEIPAPKDGVVTEILVSNEEMVEFGKGLVRIK
    EF3030          VIIEAMKVMNEIPAPKDGVVTEILVSNEEMVEFGKGLVRIK
                    *****************************************