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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001355000
- symbol?: —
- synonym:
- description?: DUF4838 domain-containing protein
- DUF4838 domain-containing protein
- conserved hypothetical protein
- KCNMB2, ball and chain domain protein
- Uncharacterised protein
- pseudogene
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1652835..1654724
- occurrence?: in 66% of 41 strains
⊟Orthologs[edit | edit source]
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MVIRVFDQQKNTYSSFALEELSYYMNRVFKTNIELVEEKEADIFVGLVNKEDRKDHVLIS
D39 MVIRVFDQQKNTYSSFALEELSYYMNRVFKTNIELVEEKEADIFVGLVNKEDRKDHVLIS
D39V MVIRVFDQQKNTYSSFALEELSYYMNRVFKTNIELVEEKEADIFVGLVNKEDRKDHVLIS
Hungary19A-6 MVIRVFDQQKNTYSSFALEELSYYMNRVFKTNIELVEEKEADIFVGLVNKEDRKDHVLIS
************************************************************
TIGR4 LDKGKGRIESNTIVGLLIGIYRMFHEFGVVYTRPGRRHDFVPELRFEDFLDKQLSIDETA
D39 LDKGKGRIESNTIVGLLIGIYRMFHEFGVVYTRPGRRHDFVPELRFEDFLDKQLSIDETA
D39V LDKGKGRIESNTIVGLLIGIYRMFHEFGVVYTRPGRRHDFVPELRFEDFLDKQLSIDETA
Hungary19A-6 LDKGKGRIESNTIVGLLIGIYRMFHEFGVVYTRPGRRHDFVPELRFEDFLDKQLSIDETA
************************************************************
TIGR4 SYYHRGVCIEGADSFENILDFIDWLPKIGMNSFFIQFENPYSFLKRWYEHEFNPYLNKEQ
D39 SYYHRGVCIEGADSFENILDFIDWLPKIGMNSFFIQFENPYSFLKRWYEHEFNPYLNKEQ
D39V SYYHRGVCIEGADSFENILDFIDWLPKIGMNSFFIQFENPYSFLKRWYEHEFNPYLNKEQ
Hungary19A-6 SYYHRGVCIEGADSFENILDFIDWLPKIGMNSFFIQFENPYSFLKRWYEHEFNPYLNKEK
***********************************************************:
TIGR4 FSNELVQELSDRLDKELQKRGLIHHRVGHGWTGEVLGYSSKFGWESGLSISEEKKPYVAE
D39 FSNELVQELSDRLDKELQKRGLIHHRVGHGWTGEVLGYSSKFGWESGLSISEEKKPYVAE
D39V FSNELVQELSDRLDKELQKRGLIHHRVGHGWTGEVLGYSSKFGWESGLSISEEKKPYVAE
Hungary19A-6 FSNELVQELSDRLDKELQKRGLIHHRVGHGWTGEVLGYSSKFGWESGLSISEEKKPYVAE
************************************************************
TIGR4 INGKRELFNTAPILTSLDFSNPDVADKMVEIIKDYAKKRPDVNYLHVWLSDARNNICECE
D39 INGKRELFNTAPILTSLDFSNPDVADKMVEIIKDYAKKRPDVNYLHIWLSDARNNICECE
D39V INGKRELFNTAPILTSLDFSNPDVADKMVEIIKDYAKKRPDVNYLHIWLSDARNNICECE
Hungary19A-6 INGKRELFNTAPILTSLDFSNPDVADKMVEIIKDYAKKRPDVNYLHVWLSDARNNICECE
**********************************************:*************
TIGR4 NCRQELVSDQYIRILNQLDRALTSEGLDTKICFLLYHELLWAPQKEKLDNPERFTMMFAP
D39 NCRQELVSDQYIRILNQLDRALTSEGLDTKICFLLYHELLWAPQKEKLDNPERFTMMFAP
D39V NCRQELVSDQYIRILNQLDRALTSEGLDTKICFLLYHELLWAPQKEKLDNPERFTMMFAP
Hungary19A-6 NCRQELVSDQYIRILNQLDRALTSEGLDTKICFLLYHELLWAPQKEKLDNPERFTMMFAP
************************************************************
TIGR4 ITRTFEMSYADVDFDNSIPTPKPYMRNKIILPNSLEENLSYLFEWQKAFKGDSFVYDYPL
D39 ITRTFEMSYADVDFDNSIPTPKPYMRNKIILPNSLEENLSYLFEWQKAFKGDSFVYDYPL
D39V ITRTFEMSYADVDFDNSIPTPKPYMRNKIILPNSLEENLSYLFEWQKAFKGDSFVYDYPL
Hungary19A-6 ITRTFEMSYADVDFDNSIPTPKPYLRNKIILPNSLEENLSYLFEWQKTFKGDSFVYDYPL
************************:**********************:************
TIGR4 GRAHYGDLGYMKISQTIYRDVSYLSNLHLNGYISCQELRAGFPHNFPNYVMGEMLWKKTR
D39 GRAHYGDLGYMKISQTIYRDVSYLSNLHLNGYISCQELRAGFPHNFPNYVMGQMLWKKTR
D39V GRAHYGDLGYMKISQTIYRDVSYLSNLHLNGYISCQELRAGFPHNFPNYVMGQMLWKKTR
Hungary19A-6 GRAHYGDLGYMKISQTIYRDVSYLSNLHLNGYISCQELRAGFPHNFPNYVMGEMLWKKTR
****************************************************:*******
TIGR4 SYEELIEEYFSALYGENWQSVVEYLEKLSIYSSCDYFNAIGSRQSDVLANHYYIAYNLAD
D39 SYEELIEEYFSALYGENWQSVVEYLEKLSIYSSCDYFNAIGSRQNDVLANHYYIAYNLAD
D39V SYEELIEEYFSALYGENWQSVVEYLEKLSIYSSCDYFNAIGSRQNDVLANHYYIAYNLAD
Hungary19A-6 SYEELIEEYFSALYGENWQSVVEYLEKLSSYSSCDYFNAIGSRQNDVLANHYYIAYNLAD
***************************** **************.***************
TIGR4 NFLPIIEENISKLLNSQKDEWKQLSYHREYVVKMAKALYLQATGKTRQAQDEWRNVLNYI
D39 NFLPIIEENISKLLNSQKDEWKQLSYHREYVVKMAKALYLQATGKTRQAQDEWRNVLNYI
D39V NFLPIIEENISKLLNSQKDEWKQLSYHREYVVKMAKALYLQATGKTRQAQDEWRNVLNYI
Hungary19A-6 NFLPIIEENISKLLNSQKDEWKQLSYHREYVVKMAKALYLQATGKTRQAQDEWRNVLNYI
************************************************************
TIGR4 RGHELLFQSNLDVYRVIEVAKNYAGFHL
D39 RGHELLFQSNLDVYRVIEVAKNYAGFHL
D39V RGHELLFQSNLDVYRVIEVAKNYAGFHL
Hungary19A-6 RGHELLFQSNLDVYRVIEVAKNYAGFHL
****************************