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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001357000
- symbol?: rpoE
- synonym:
- description?: DNA-directed RNA polymerase subunit delta
- DNA-directed RNA polymerase subunit delta
- DNA-directed RNA polymerase, delta subunit
- putative DNA-directed RNA polymerase, delta subunit
- putative DNA-directed RNA polymerase subunit delta
- putative DNA-directed RNA polymerase subunit
- DNA-dependent RNA Polymerase, delta subunit (RNAP delta factor)
- DNA-directed RNA polymerase delta subunit
- DNA-dependent RNA Polymerase%2C delta subunit (RNAP delta factor)
- DNA-directed RNA polymerase, delta subunit, putative
- RNA polymerase (delta subunit)
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1705408..1705995
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
(12F)
ASP0581:
EL334_RS02555 (rpoE)
(19F)
ATCC 49619:
EL263_RS02545 (rpoE)
(23F)
ATCC 700669:
SPN23F_RS02300 (rpoE)
(14)
INV200:
SPNINV200_RS02325 (rpoE)
(14)
JJA:
SPJ_RS02335 (rpoE)
(19F)
MDRSPN001:
MDRSPN_RS02275 (rpoE)
(19A)
SP49:
BMJ42_RS03005 (rpoE)
(1)
SPN032672:
SPN032672_RS08690 (rpoE)
(3)
SPN034156:
SPN034156_RS08430 (rpoE)
(3)
SPN034183:
SPN034183_RS02500 (rpoE)
(3)
SPN994038:
SPN994038_RS02425 (rpoE)
(3)
SPN994039:
SPN994039_RS02420 (rpoE)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MELEVFAGQEKSELSMIEVARAILELRGRDHEMHFSDLVNEIQNYLGTSNSDIREALPLF
D39 MELEVFAGQEKSELSMIEVARAILELRGRDHEMHFSDLVNEIQNYLGTSNSDIREALPLF
D39V MELEVFAGQEKSELSMIEVARAILELRGRDHEMHFSDLVNEIQNYLGTSNSDIREALPLF
Hungary19A-6 MELEVFAGQEKSELSMIEVARAILELRGRDHEMHFSDLVNEIQNYLGTSNSDIREALPLF
EF3030 MELEVFAGQEKSELSMIEVARAILELRGRDHEMHFSDLVNEIQNYLGTSNSDIREALPLF
************************************************************
TIGR4 YTELNFDGSFISLGDNKWGLRSWYGVDEIDEEIIALEENDDDEVAPKAKKKRVNAFMDGD
D39 YTELNFDGSFISLGDNKWGLRSWYGVDEIDEEIIALEENDDDEVAPKAKKKRVNAFMDGD
D39V YTELNFDGSFISLGDNKWGLRSWYGVDEIDEEIIALEENDDDEVAPKAKKKRVNAFMDGD
Hungary19A-6 YTELNFDGSFISLGDNKWGLRSWYGVDEIDEEIIALEENDDDEVAPKAKKKRVNAFMDGD
EF3030 YTELNFDGSFISLGDNKWGLRSWYGVDEIDEEIIALEENDDDEVAPKAKKKRVNAFMDGD
************************************************************
TIGR4 SDAIDYNADDPEDEDAYEADPALSYDDENPDDEKNEVEAYDAEINEIAPDDLGEDVDLNE
D39 SDAIDYNADDPEDEDAYEADPALSYDDENPDDEKNEVEAYDAEINEIAPDDLGEDVDLNE
D39V SDAIDYNADDPEDEDAYEADPALSYDDENPDDEKNEVEAYDAEINEIAPDDLGEDVDLNE
Hungary19A-6 SDAIDYNADDPEDEDAYEADPALSYDDENPDDEKNEVEAYDAEINEIAPDDLGEDVDLNE
EF3030 SDAIDYNADDPEDEDAYEADPALSYDDENPDDEKNEVEAYDAEINEIAPDDLGEDVDLNE
************************************************************
TIGR4 DDDEFSDDDAETSEE
D39 DDDEFSDDDAETSEE
D39V DDDEFSDDDAETSEE
Hungary19A-6 DDDEFSDDDAETSEE
EF3030 DDDEFSDDDAETSEE
***************