From PneumoWiki
Jump to navigation Jump to search
PangenomeTIGR4
serotype 4
D39
serotype 2
D39V
serotype 2
Hungary19A-6
serotype 19A
EF3030
serotype 19F
670-6B
serotype 6B
6A-10
serotype 6A
70585
serotype 5
A026
serotype 19F
A66
serotype 3
AP200
serotype 11A
ASP0581
serotype 12F
ATCC 49619
serotype 19F
ATCC 700669
serotype 23F
BVJ1JL
serotype 1
CGSP14
serotype 14
G54
serotype 19F
HU-OH
serotype 3
Hu15
serotype 19A
Hu17
serotype 19A
INV104
serotype 1
INV200
serotype 14
JJA
serotype 14
MDRSPN001
serotype 19F
NCTC7466
serotype 2
NU83127
serotype 4
OXC141
serotype 3
P1031
serotype 1
R6
serotype 2
SP49
serotype 19A
SPN032672
serotype 1
SPN034156
serotype 3
SPN034183
serotype 3
SPN994038
serotype 3
SPN994039
serotype 3
SPNA45
serotype 3
ST556
serotype 19F
TCH8431/19A
serotype 19A
Taiwan19F-14
serotype 19F
Xen35
serotype 4
gamPNI0373
serotype 1

Summary[edit | edit source]

  • pan ID?: PNEUPAN001408000
  • symbol?: dnaJ
  • synonym:
  • description?: molecular chaperone DnaJ

      descriptions from strain specific annotations:

    • molecular chaperone DnaJ
    • chaperone protein DnaJ
    • dnaJ protein
    • dnaJ protein, Heat-shock protein (activation of DnaK)
    • chaperone DnaJ
    • DnaJ-class molecular chaperone with C-terminal Zn finger domain
    • Heat-shock protein (activation of DnaK)
  • strand?: +
  • coordinates?: 1747854..1748992
  • occurrence?: in 100% of 41 strains

Orthologs[edit | edit source]

Genome Viewer[edit | edit source]

TIGR4
D39
D39V
Hungary19A-6
EF3030

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.505)


    TIGR4           MNNTEFYDRLGVSKNASADEIKKAYRKLSKKYHPDINKEPGAEDKYKEVQEAYETLSDDQ
    D39             MNNTEFYDRLGVSKNASADEIKKAYRKLSKKYHPDINKEPGAEDKYKEVQEAYETLSDDQ
    D39V            MNNTEFYDRLGVSKNASADEIKKAYRKLSKKYHPDINKEPGAEDKYKEVQEAYETLSDDQ
    Hungary19A-6    MNNTEFYDRLGVSKNASADEIKKAYRKLSKKYHPDINKEPGAEDKYKEVQEAYETLSDDQ
    EF3030          MNNTEFYDRLGVSKNASADEIKKAYRKLSKKYHPDINKDPGAEDKYKEVQEAYETLSDDQ
                    **************************************:*********************

    TIGR4           KRAAYDQYGAAGANGGFGGAGGFGGFNGAGGFGGFEDIFSSFFGGGGSSRNPNAPRQGDD
    D39             KRAAYDQYGAAGAN------GGFGGFNGAGGFGGFEDIFSSFFGGGGSSRNPNAPRQGDD
    D39V            KRAAYDQYGAAGAN------GGFGGFNGAGGFGGFEDIFSSFFGGGGSSRNPNAPRQGDD
    Hungary19A-6    KRAAYDQYGAAGANGGFGGDGGFGGFNGAGGFGGFEDIFSSFFGGGGSSRNPNAPRQGDD
    EF3030          KRAAYDQYGAAGTNGGFGGAGGFGGFNGAGGFGGFEDIFSSFFGGGGSSRNPNAPRQGDD
                    ************:*      ****************************************

    TIGR4           LQYRVNLTFEEAIFGTEKEVKYHREAGCRTCNGSGAKPGTSPVTCGRCHGAGVINVDTQT
    D39             LQYRVNLTFEEAIFGTEKEVKYHREAGCRTCNGSGAKPGTSPVTCGRCHGAGVINVDTQT
    D39V            LQYRVNLTFEEAIFGTEKEVKYHREAGCRTCNGSGAKPGTSPVTCGRCHGAGVINVDTQT
    Hungary19A-6    LQYRVNLTFEEAIFGTEKEVKYHREAGCRTCNGSGAKPGTSPVTCGRCHGAGVINVDTQT
    EF3030          LQYRVNLTFEEAIFGTEKEVKYHREAGCRTCNGSGAKPGTSPVTCGRCHGAGVINVDTQT
                    ************************************************************

    TIGR4           PLGMMRRQVTCDVCHGRGKEIKYPCTTCHGTGHEKQAHSVHVKIPAGVETGQQIRLAGQG
    D39             PLGMMRRQVTCDVCHGRGKEIKYPCTTCHGTGHEKQAHSVHVKIPAGVETGQQIRLAGQG
    D39V            PLGMMRRQVTCDVCHGRGKEIKYPCTTCHGTGHEKQAHSVHVKIPAGVETGQQIRLAGQG
    Hungary19A-6    PLGMMRRQVTCDVCHGQGKEIKYPCTTCHGTGHEKQAHSVHVKIPAGVETGQQIRLAGQG
    EF3030          PLGMMRRQVTCDVCHGRGKEIKYPCTTCHGTGHEKQAHSVHVKVPAGVETGQQIRLAGQG
                    ****************:**************************:****************

    TIGR4           EAGFNGGPYGDLYVVVSVEASDKFEREGTTIFYNLNLNFVQAALGDTVDIPTVHGDVELV
    D39             EAGFNGGPYGDLYVVVSVEASDKFEREGTTIFYNLNLNFVQAALGDTVDIPTVHGDVELV
    D39V            EAGFNGGPYGDLYVVVSVEASDKFEREGTTIFYNLNLNFVQAALGDTVDIPTVHGDVELV
    Hungary19A-6    EAGFNGGPYGDLYVVVSVEASDKFEREGTTIFYNLNLNFVQAALGDTVDIPTVHGDVELV
    EF3030          EAGFNGGPYGDLYVVVSVEASDKFEREGTTIFYNLNLNFVQAALGDTVDIPTVHGDVELV
                    ************************************************************

    TIGR4           IPEGTQTGKKFRLRSKGAPSLRGGAVGDQYVTVNVVTPTGLNDRQKVALKEFAAAGDLKV
    D39             IPEGTQTGKKFRLRSKGAPSLRGGAVGDQYVTVNVVTPTGLNDRQKVALKEFAAAGDLKV
    D39V            IPEGTQTGKKFRLRSKGAPSLRGGAVGDQYVTVNVVTPTGLNDRQKVALKEFAAAGDLKV
    Hungary19A-6    IPEGTQTGKKFRLRSKGAPSLRGGAVGDQYVTVNVVTPTGLNDRQKVALKEFAAAGDLKV
    EF3030          IPEGTQTGKKFRLRGKGAPSLRGGAVGDQYVTVNVVTPTGLNDRQKVALKEFAAAGDLKV
                    **************.*********************************************

    TIGR4           NPKKKGFFDHIKDAFDGE
    D39             NPKKKGFFDHIKDAFDGE
    D39V            NPKKKGFFDHIKDAFDGE
    Hungary19A-6    NPKKKGFFDHIKDAFDGE
    EF3030          NPKKKGFFDHIKDAFDGE
                    ******************