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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BM6001serotype 19F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7465serotype 1
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
⊟Summary[edit | edit source]
- pan ID?: PNEUPAN001498000
- symbol?: vncR
- synonym:
- description?: response regulator transcription factor VncR
- response regulator transcription factor VncR
- VncR, response regulator
- two-component system, response regulator
- DNA-binding response regulator VncR
- Sensory transduction protein regX3
- DNA-binding response regulator
- transcriptional regulator
- response regulator
- response regulator receiver domain protein
- Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
- response regulator transcription factor
- transcriptional regulatory, C terminal family protein
- Two-component response regulator VncR
- Two-component system response regulator VncR
- VncR%2C response regulator
- VncR response regulator TCS10
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 1916315..1916971
- occurrence?: in 100% of 43 strains
⊟Orthologs[edit | edit source]
(12F)
ASP0581:
EL334_RS03045 (vncR)
(19F)
ATCC 49619:
EL263_RS02985 (vncR)
(23F)
ATCC 700669:
SPN23F_RS02780 (vncR)
(14)
INV200:
SPNINV200_RS02845 (vncR)
(14)
JJA:
SPJ_RS02785 (vncR)
(19F)
MDRSPN001:
MDRSPN_RS07580 (vncR)
(19A)
SP49:
BMJ42_RS03525 (vncR)
(1)
SPN032672:
SPN032672_RS09220 (vncR)
(3)
SPN034156:
SPN034156_RS08890 (vncR)
(3)
SPN034183:
SPN034183_RS02980 (vncR)
(3)
SPN994038:
SPN994038_RS02900 (vncR)
(3)
SPN994039:
SPN994039_RS02900 (vncR)
⊟Genome Viewer[edit | edit source]
| TIGR4 | |
| D39 | |
| D39V | |
| Hungary19A-6 | |
| EF3030 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.505)
TIGR4 MKILIVEDEEMIREGVSDYLTDCGYETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGL
D39 MKILIVEDEEMIREGVSDYLTDCGYETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGL
D39V MKILIVEDEEMIREGVSDYLTDCGYETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGL
Hungary19A-6 MKILIVEDEEMIREGVSDYLTDCGYETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGL
EF3030 MKILIVEDEEMIREGVSDYLTDCGYETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGL
************************************************************
TIGR4 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD
D39 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD
D39V EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD
Hungary19A-6 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD
EF3030 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD
************************************************************
TIGR4 TGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT
D39 TGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT
D39V TGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT
Hungary19A-6 TGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT
EF3030 TGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT
************************************************************
TIGR4 DEVPFDRVIDVYIKELRKKLDLDCILTVRNVGYKLERK
D39 DEVPFDRVIDVYIKELRKKLDLDCILTVRNVGYKLERK
D39V DEVPFDRVIDVYIKELRKKLDLDCILTVRNVGYKLERK
Hungary19A-6 DEVPFDRVIDVYIKELRKKLDLDCILTVRNVGYKLERK
EF3030 DEVPFDRVIDVYIKELRKKLDLDCILTVRNVGYKLERK
**************************************